View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_low_6 (Length: 474)
Name: NF3764_low_6
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 6916479 - 6916020
Alignment:
| Q |
1 |
tgaaaagattcatcttctgattttgtttgtgaatgtaattatggagtttgattaatgagctaaaattggtgtttgaagtcttgggttgtcggcagaaatg |
100 |
Q |
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| T |
6916479 |
tgaaaagattcatcttctgattttgtttgtgaatgtaattatggagtttgattaatgagctaaaattggtgtttgaagtcttgggttgtcggcagaaatg |
6916380 |
T |
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| Q |
101 |
gatgtcataattggttaggtttgagtatattgttagctcaagaccctaagttaatgtgaaaacaggnnnnnnnttatttgatgggttgtagggtgatgat |
200 |
Q |
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| T |
6916379 |
gatgtcataattagttagctttgagtatattgttagctcaagatcctaagttaatgtgaaaacaggaaaaaa-ttatttgatgggttgtagggtgatgat |
6916281 |
T |
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| Q |
201 |
tttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacagatggtgtgacatgtgaatgtagaaatg |
300 |
Q |
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| T |
6916280 |
tttgaaggtttactctgtgtgttgtagtagataatgtattgaaacaaggaagtaaaattaagatcaaatacagatggtgtgacatgtgaatgtagaaatg |
6916181 |
T |
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| Q |
301 |
aaacacaaagatatgaactaaaagaatacggttttacttgtcaacaatagtgtgcgtttgttgttgctacttgacatgacactgcacaaagatatcctct |
400 |
Q |
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| T |
6916180 |
aaacaca--gatatgaactcaaagaatacggttttacttgtcaacaatagtgtgcgtttgttgttgctacttgacatgacactgcacaaagatatcctct |
6916083 |
T |
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| Q |
401 |
gttttacttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagtatt |
463 |
Q |
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| T |
6916082 |
gttttacttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagtatt |
6916020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 6916075 - 6916012
Alignment:
| Q |
27 |
ttgtgaatgtaattatggagtttgattaatgagctaaaattggtgtttgaagtcttgggttgtc |
90 |
Q |
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| T |
6916075 |
ttgtgaatctgattatggagtttaattaatgggctgaaattggtgtttgaagtattgtgttgtc |
6916012 |
T |
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