View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_low_8 (Length: 447)
Name: NF3764_low_8
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 31033585 - 31033156
Alignment:
| Q |
1 |
tccatcatgtaacaacccacactgcgcaggaatgggcagaaacttttgttaggtatactatttgtagtctcaatatcttctcttatatattcaaagtttg |
100 |
Q |
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| T |
31033585 |
tccatcatgtaacaacccacactgcgcaggaatgggcagaaacttttgttaggtatactatttgtagtctcaatatcttctcttatatattcaaagtttg |
31033486 |
T |
|
| Q |
101 |
tggtttacaatgagggtggtgtatcttatcagggtctgttaactttgtacataatgattcataacttggtttgcagttaagactttgaactgtaattctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
31033485 |
tggtttacaatgagggtggtgtatcttatcagggtctgttaactttgtacataatgattcataacttgctctgcagttaagactttgaactgtaactctg |
31033386 |
T |
|
| Q |
201 |
gaggcttttttaaaatgttactgttagttatacgcttgatttgcctaattaattaatgtcgtctccttggttgtatcttaaggcttctgttgttttgggt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033385 |
gaggcttttttaaaatgttactgttagttatatgcttgatttgcctaattaattaaagtcgtctccttggttgtatcttaaggcttctgttgttttgggt |
31033286 |
T |
|
| Q |
301 |
aaattctgtaaaagtacacagatagcattttagttcaatatgatgcttatttacttgtatcgttgtaggtttaggaataaaagaaagtcatgcagattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033285 |
aaattctgtaaaagtacacagatagcattttagttcaatatgatgcttatttacttgtatcgttgtaggtttaggaataaaagaaagtcatgcagattta |
31033186 |
T |
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| Q |
401 |
cgattttaactatgcactgaagtatgatat |
430 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31033185 |
cgattttaactatgcactgaagtatgatat |
31033156 |
T |
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