View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3765_high_1 (Length: 900)
Name: NF3765_high_1
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 36680154 - 36680510
Alignment:
| Q |
18 |
aaaaacagtttgacttatataa---ccatttatactataagaggttaattaagttatttatccaaacaaaactctatttagtgagcactaagcagaatca |
114 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36680154 |
aaaaacagtttgacttatataataaccatttatac---aagaggttaattaagttatttatccaaacaaaactctatttagtgagcactaagcagaatca |
36680250 |
T |
|
| Q |
115 |
aacagccccc----------------------cacacaccacc---acccccttgttttaaatatcaaaattttcagcatattttcataagctcatcagt |
189 |
Q |
| |
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|||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36680251 |
aacagccccccccccccccccccacacacacacacacaccaccaccaccaccttgttttaaatatcaaaattttcagcatattttcataagctcatcagt |
36680350 |
T |
|
| Q |
190 |
gtcttagaaaaactaactatattttatatgaaaatagttttacttatatgataagcacttacactataagcgcttaactaagcaaaaccaaacaaccacc |
289 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36680351 |
gtcttataaaaactaactatattttatatgaaaatagttttacttatatgataagcacttacactataagcgcttacctaagcaaaaccaaacaaccacc |
36680450 |
T |
|
| Q |
290 |
cccaccttaccccttctttcaaaaatcaaatttttaccaaaaattcaactcacagtgaac |
349 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36680451 |
cccacctcaccccttctttcaaaaatcaaatttttaccaaaaattcaactcacagtgaac |
36680510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 413 - 676
Target Start/End: Original strand, 36680572 - 36680838
Alignment:
| Q |
413 |
caataacccaattcataacatgattaaccaataacagaacaagattaaacaacaattaataacnnnnnnnn---ttacatttttactgttaggagaatgg |
509 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36680572 |
caataacccaattcataacatgattaatcaataacagaacaagattaaacaacaattaataacaaaaaaaaaaattacagttttactgttaggagaatgg |
36680671 |
T |
|
| Q |
510 |
ttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctga |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36680672 |
ttgcttgaatttcgtgagacgcgggaagaaataggagtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctga |
36680771 |
T |
|
| Q |
610 |
aaattcgaagaaaaatgaacaaaaaggagcattaggaagatgaggaattgtgagaggggttgagttc |
676 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36680772 |
aaatttgaagaaaaatgaaccaaaaggagcattaggaatgtgaggaattgtgagaggggttgagttc |
36680838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 729 - 832
Target Start/End: Original strand, 36680891 - 36680991
Alignment:
| Q |
729 |
taagcacttactctttcactgtagaatttagcttctgaattctgatgcgcagttgtctaaggggtgtattgaattaaaatttaaaagattttttaatgat |
828 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | || |||||| ||||||| ||||||||| |||||||||| ||||||||||| |
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| T |
36680891 |
taagcacttactctttcactatagaatttagcttctgaattctgagacacacttgtct-aggggtg--ttgaattaagatttaaaagactttttaatgat |
36680987 |
T |
|
| Q |
829 |
aaaa |
832 |
Q |
| |
|
|||| |
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|
| T |
36680988 |
aaaa |
36680991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 27565281 - 27565346
Alignment:
| Q |
24 |
agtttgacttatataa---ccatttatactataagaggttaattaagttatttatccaaacaaaac |
86 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| | ||||||||| | |||||||||||||||| |
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| T |
27565281 |
agtttgacttatataataactatttatactataagcgcttaattaagctgtttatccaaacaaaac |
27565346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 6e-52; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 484 - 624
Target Start/End: Original strand, 26931115 - 26931255
Alignment:
| Q |
484 |
ttacatttttactgttaggagaatggttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtg |
583 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26931115 |
ttacgtttttactgttaggagaatggatggttgaatttggtgagatgcgggaagaaacaggtgtgagaagatgcggcttcttcttgtctggttcgtcgtg |
26931214 |
T |
|
| Q |
584 |
atctgaattttccatttcgattctgaaaattcgaagaaaaa |
624 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
26931215 |
atctgaattttccatttcgattctaaaaatttgaagaaaaa |
26931255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 489 - 643
Target Start/End: Original strand, 26927561 - 26927715
Alignment:
| Q |
489 |
tttttactgttaggagaatggttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtgatctg |
588 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| || |||||||||||| |||| |||||| |||||||||||||||||| || |||||||| |
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|
| T |
26927561 |
tttttactgttaggagaatggttggttgaatttggtgagatgcaggaagaaacaggtgtgaaaagatgctgcttcttcttgtctggttggtggtgatctg |
26927660 |
T |
|
| Q |
589 |
aattttccatttcgattctgaaaattcgaagaaaaatgaacaaaaaggagcatta |
643 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| |
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|
| T |
26927661 |
aattttccatttggattctgaaaagatgaagaaaaatgaaccaaacgaagcatta |
26927715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 484 - 629
Target Start/End: Complemental strand, 26939968 - 26939823
Alignment:
| Q |
484 |
ttacatttttactgttaggagaatggttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtg |
583 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||| ||||| ||| |||||| ||| ||||||||||| ||||||||||||| ||||| |||||| |
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|
| T |
26939968 |
ttacattttcactattaggagaatggttggttgaatttggtgagccgcataaagaaataggtgtgagaagatgtggcttcttcttgtttggttggtcgtg |
26939869 |
T |
|
| Q |
584 |
atctgaattttccatttcgattctgaaaattcgaagaaaaatgaac |
629 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
26939868 |
atctgaattttccatttcaattctgaaaatttgaagaaaaatgaac |
26939823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 484 - 629
Target Start/End: Original strand, 26964460 - 26964605
Alignment:
| Q |
484 |
ttacatttttactgttaggagaatggttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtg |
583 |
Q |
| |
|
|||| |||| ||| ||||||||||||||| |||||||| ||||||| || |||||||| | ||||||||||| | ||||||||||||||||| |||| |
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|
| T |
26964460 |
ttacgttttcactattaggagaatggttggttgaatttggtgagacttggaaagaaacaagtgtgagaagatgcgtcttcttcttgtctggttggtcgat |
26964559 |
T |
|
| Q |
584 |
atctgaattttccatttcgattctgaaaattcgaagaaaaatgaac |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26964560 |
atctgaattttccatttcgattctgaaaatttgaagaaaaatgaac |
26964605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 26940048 - 26939995
Alignment:
| Q |
419 |
cccaattcataacatgattaaccaataacagaacaagattaaacaacaattaat |
472 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
26940048 |
cccaattaataacataattaatcaataacaaaacaagattaaacaacaattaat |
26939995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9380061 - 9380013
Alignment:
| Q |
35 |
tataaccatttatactataagaggttaattaagttatttatccaaacaa |
83 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9380061 |
tataactatttatactataagcgcttaattaagttatttatccaaacaa |
9380013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 472
Target Start/End: Original strand, 26964270 - 26964323
Alignment:
| Q |
419 |
cccaattcataacatgattaaccaataacagaacaagattaaacaacaattaat |
472 |
Q |
| |
|
||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
26964270 |
cccaattaataacataattaatcaataccaaaacaagattaaacaacaattaat |
26964323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 484 - 649
Target Start/End: Original strand, 29416174 - 29416339
Alignment:
| Q |
484 |
ttacatttttactgttaggagaatggttgcttgaatttcgtgagacgcgggaagaaacaggagtgagaagatgaggcttcttcttgtctggttcgtcgtg |
583 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29416174 |
ttacatttttgccgttaggagaatggttggttgaatttggtgaaacgcgggaagaaacaggagtgagaagatgaggcttcttgttgttgggttcgtcgtg |
29416273 |
T |
|
| Q |
584 |
atctgaattttccatttcgattctgaaaattcgaagaaaaatgaacaaaaaggagcattaggaaga |
649 |
Q |
| |
|
|||||||||||||||| | ||||| |||| |||||||| |||| ||| | ||||||||||||| |
|
|
| T |
29416274 |
gtctgaattttccatttgggttctgcgaattggaagaaaagggaaccaaacgaagcattaggaaga |
29416339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 29415947 - 29416000
Alignment:
| Q |
289 |
ccccaccttaccccttctttcaaaaatcaaatttttaccaaaaattcaactcac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29415947 |
ccccaccttaccccttctttcaaaaatcaaatttttaatcaaaattcaactcac |
29416000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 2035502 - 2035541
Alignment:
| Q |
44 |
ttatactataagaggttaattaagttatttatccaaacaa |
83 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2035502 |
ttatactataagtgcttaattaagttatttatccaaacaa |
2035541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 22343523 - 22343489
Alignment:
| Q |
49 |
ctataagaggttaattaagttatttatccaaacaa |
83 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22343523 |
ctataagagcttaattaagttatttatccaaacaa |
22343489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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