View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3765_high_10 (Length: 464)

Name: NF3765_high_10
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3765_high_10
NF3765_high_10
[»] chr8 (5 HSPs)
chr8 (13-197)||(10397387-10397565)
chr8 (298-446)||(10398761-10398909)
chr8 (207-286)||(10397612-10397691)
chr8 (207-286)||(10398084-10398163)
chr8 (219-286)||(10398254-10398321)
[»] chr4 (2 HSPs)
chr4 (58-125)||(24181731-24181798)
chr4 (93-128)||(37660888-37660923)
[»] chr2 (1 HSPs)
chr2 (75-132)||(12454009-12454066)
[»] chr1 (1 HSPs)
chr1 (58-125)||(16853674-16853741)
[»] chr6 (1 HSPs)
chr6 (75-133)||(20117191-20117249)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 10397387 - 10397565
Alignment:
Q  13 atcatcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcactt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      ||| |||||||||||    
T  10397387 atcatcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcaccaaaaaccttaaaacatta------ttggtcctctcactt 10397480  T
Q  113 atatgttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10397481 atatgttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 10397565  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 298 - 446
Target Start/End: Original strand, 10398761 - 10398909
Alignment:
Q  298 ttttgttactaacattatggtagacatgcaattaatggaacgaaacaaacatctacccaatttgttgtgtcaaaaaataaataaaactagtaccctatat 397  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10398761 ttttgttactagcattatggtagacatgcaattaatggaacgaaacaaacatctacccaatttgttgtgtcaaaaaataaataaaactagtaccctatat 10398860  T
Q  398 atgtacatgtgagggatcatgcttttacatgcatccaaatacaatgaat 446  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10398861 atgtacatgtgagggatgatgcttttacatgcatccaaatacaatgaat 10398909  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 10397612 - 10397691
Alignment:
Q  207 agaaaaaaggagatcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 286  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10397612 agaaaaaaggagatcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10397691  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 10398163 - 10398084
Alignment:
Q  207 agaaaaaaggagatcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 286  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10398163 agaaaaaaggagatcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10398084  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 10398254 - 10398321
Alignment:
Q  219 atcgataaagttttcctctacacaagagaggaccatagaagttccgtaatagaccctataatttatta 286  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10398254 atcgataaagtttttctctacacaagagaggaccatagaagctccgtaatagaccctacaatttatta 10398321  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 24181731 - 24181798
Alignment:
Q  58 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 125  Q
    ||||||||||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  24181731 acaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 24181798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 37660888 - 37660923
Alignment:
Q  93 atttattgatcctctcacttatatgttgttcaacct 128  Q
    |||||||| |||||||||||||||||||||||||||    
T  37660888 atttattggtcctctcacttatatgttgttcaacct 37660923  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 12454066 - 12454009
Alignment:
Q  75 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaac 132  Q
    |||| |||||||||||| |||||| | || |||||||||||||||||||||| |||||    
T  12454066 aaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaacttcaac 12454009  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 16853741 - 16853674
Alignment:
Q  58 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 125  Q
    |||||| |||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  16853741 acaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 16853674  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 20117249 - 20117191
Alignment:
Q  75 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaacc 133  Q
    |||||||||| ||||| |||||||   | ||||||||||||||||||||||| ||||||    
T  20117249 aaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaacttcaacc 20117191  T

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