View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_16 (Length: 376)
Name: NF3765_high_16
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 37960208 - 37960556
Alignment:
| Q |
18 |
gaaattagtgattctagacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960208 |
gaaattagtgattctagacctctcaagagccaaaccaacttcaattccacctccgccgtctctacaatcagaaagagaaatcgaaccggacgaatcaaga |
37960307 |
T |
|
| Q |
118 |
tgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggtt |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37960308 |
tgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccaggtt |
37960407 |
T |
|
| Q |
218 |
ttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
37960408 |
ttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctttaaatgtcttatcttcttttcgataccaattgaagccgaaac |
37960507 |
T |
|
| Q |
318 |
aatcccattttttccaattaactcatctctctttacagccacagtataa |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37960508 |
aatcccattttttccaattaactcatctctctttacagccacggtataa |
37960556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 37954399 - 37954613
Alignment:
| Q |
18 |
gaaattagtgattctagacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaaga |
117 |
Q |
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||||||| | ||||||||||||||||||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37954399 |
gaaattaatcattctagacctctcaagagtcaaaccaaccttaattccacctccaccacctctacaatcagaaagagaaatcgaaccggatgaatcaaga |
37954498 |
T |
|
| Q |
118 |
tgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggtt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| | | |||||||||||||| |
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| T |
37954499 |
tgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaacagccaaattcggtgaaccagcaatcacattaacagacttaccaggtt |
37954598 |
T |
|
| Q |
218 |
ttgacatttccctat |
232 |
Q |
| |
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||||||||||||||| |
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| T |
37954599 |
ttgacatttccctat |
37954613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 37915987 - 37915639
Alignment:
| Q |
18 |
gaaattagtgattctagacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaaga |
117 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
37915987 |
gaaattagtcatttgagacctctcaagagccaaaccaacctcaattccacctcgaccatctctacaatcagaaagagaaatcgaactggacgaatcaata |
37915888 |
T |
|
| Q |
118 |
tgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggtt |
217 |
Q |
| |
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|| ||| |||| |||||||| || || |||||||||||||| || ||||||||| | | ||| || || |||| ||||| | | ||| ||||| |||| |
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| T |
37915887 |
tgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggtt |
37915788 |
T |
|
| Q |
218 |
ttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaac |
317 |
Q |
| |
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|| |||||||||||||||| |||||| |||||| |||| ||||| |||| |||||| |||| |||||||||| ||||||| || ||| ||| || |
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| T |
37915787 |
ttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaag |
37915688 |
T |
|
| Q |
318 |
aatcccattttttccaattaactcatctctctttacagccacagtataa |
366 |
Q |
| |
|
||| |||| |||||||| ||||||| | || |||||| | ||||||||| |
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|
| T |
37915687 |
aataccatcttttccaactaactcacccctatttacaactacagtataa |
37915639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 73 - 300
Target Start/End: Complemental strand, 37907779 - 37907552
Alignment:
| Q |
73 |
ccatctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacag |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||| || || |||||||||||||| || ||| ||||| |
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|
| T |
37907779 |
ccatctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacat |
37907680 |
T |
|
| Q |
173 |
ccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgact |
272 |
Q |
| |
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| | ||| ||||| ||||||||||| || || |||||||||||| | | |||| ||||||||| ||||| ||||||||| |||||||||||| ||| |
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| T |
37907679 |
caagtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcact |
37907580 |
T |
|
| Q |
273 |
cttaaaatgtcttatcttcttttcaata |
300 |
Q |
| |
|
|||||||| |||||||||||||| |||| |
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|
| T |
37907579 |
cttaaaatctcttatcttcttttaaata |
37907552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 360
Target Start/End: Complemental strand, 3784117 - 3783787
Alignment:
| Q |
39 |
ctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaat------cgaaccggacgaatcaagatgaactgcatcagat |
132 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
3784117 |
ctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaaatagaaatcgaagacgacgaatcaagatgaactgcatcagat |
3784018 |
T |
|
| Q |
133 |
ttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctat |
232 |
Q |
| |
|
|| ||||||||||||||||| || || || ||||||||| | ||||| ||||| ||||||| | | |||||||||||||||||| | ||| |||| |
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|
| T |
3784017 |
tttttaggcttcccccacccgaagtcagtctcataaacatcaaatttaggtgagccagcaattcctacaacagacttaccaggttttgataattcactat |
3783918 |
T |
|
| Q |
233 |
aatcagacatcaatgtttcagctcctaacaaagc---atgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttt |
329 |
Q |
| |
|
|||||| || | || || ||||||||||| || |||||| |||| |||||||||| |||| |||||| ||| ||||| ||||||||||||| | |
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| T |
3783917 |
gatcagaagtccaccatttaggacctaacaaagcattatcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgt |
3783818 |
T |
|
| Q |
330 |
tccaattaactcatctctctttacagccaca |
360 |
Q |
| |
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||||| ||||||| | ||||||||| ||||| |
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|
| T |
3783817 |
tccaactaactcagccctctttacaaccaca |
3783787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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