View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_17 (Length: 375)
Name: NF3765_high_17
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 25047639 - 25047295
Alignment:
| Q |
13 |
cagacaatattattaatcttttcctcaaaatttaattgtatagtatattgaaaagagtgattatcatgtaatcggcgtaaaaagtacttttgtatacgtc |
112 |
Q |
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| T |
25047639 |
cagacaatattattaatcttttcctcaaaatttaattgtatagtatattgaaaagagtgattatcatgtaatcggcgtaaaaagtacttttgtatacttc |
25047540 |
T |
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| Q |
113 |
cagcttctccataaactaacgtttgcttcgaagatagctcttttggtcttgtttgatgtatccaatgtcattttccccacatgttcgcctactaaccaat |
212 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25047539 |
cagcttctccataaactaacgtttgcttcaaagatagctcttttggtcttgtttgatgtatccaatgtcattttccccacatgttcgcctactaaccaat |
25047440 |
T |
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| Q |
213 |
tcatgtgtttcctttggccttatatcggagttgtctgcaaaatcaatctgtaactcttgtacttctaaaatatttctctgtgaaagaatcatgtgactag |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25047439 |
tcatgtgtttcctttggccttatatcggagtcgtctgcaaaatcaatctgtaactcttgtacttctaaaatatttctctgtgaaagcatcatgtgactag |
25047340 |
T |
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| Q |
313 |
tttttgatgttcggagaatatgattgtgatttaacacaaggtgaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25047339 |
tttttgatgttcggagaatatgattgtgatttaacacaaggtgaa |
25047295 |
T |
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