View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_2 (Length: 819)
Name: NF3765_high_2
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 36 - 800
Target Start/End: Original strand, 8452722 - 8453479
Alignment:
| Q |
36 |
aaaatgtaaactaaggaacaataggaaatacagcataatgatcatcaaattaaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccg |
135 |
Q |
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| T |
8452722 |
aaaatgtaaactaaggaacaataggaaatacaacataatgatcatcaaattaaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccg |
8452821 |
T |
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| Q |
136 |
gcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggatggatggatattggatactgaggagcatgataagagaaaaggcaacagtt |
235 |
Q |
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| T |
8452822 |
gcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggatggatggatattggatactgaggagcatgataagagaaaaggcaacagtt |
8452921 |
T |
|
| Q |
236 |
ggtaaagtctgataaatccataatatttaagacattacaagaagaatgaagagcagataatattactttatagaggaaaaggatgtgtgaattttcacat |
335 |
Q |
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| T |
8452922 |
ggtaaagtctgataaatccata---tttaagacattacaagaagaatgaagagcagataatattactttatagaggaaaaggatgtgtcaattttcacat |
8453018 |
T |
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| Q |
336 |
aatcatgcctcatgttgcttggaatatcagtactggtttctttttgtaagttggaatgaagggatttgctcaaatgtacaccagaagtagaacgaacctg |
435 |
Q |
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| T |
8453019 |
aatcatgcctcatgttgcttggaatatcagtaatggtttctttttgtaagttggaatgaaaggatttgctcgaatgtacaccagaagtagaacgaacctg |
8453118 |
T |
|
| Q |
436 |
catgaaagaaagatattgatgccatgatcatttggataattggtagtcggcaccataaagttcgcataaatcacctggaggaggcggacttcaattgcag |
535 |
Q |
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| T |
8453119 |
catgaaa----gatattgatgccatgatcatttggataattggtagtcggcaccataaagttcgcataaatcacctggaggaggcggacttcaattgcag |
8453214 |
T |
|
| Q |
536 |
gtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcatacctagttggaag |
635 |
Q |
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| T |
8453215 |
gtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcatacctagttggaag |
8453314 |
T |
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| Q |
636 |
gctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctgagacattcaattccttgagtctaccaagaatctcattgtatacttca |
735 |
Q |
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| T |
8453315 |
gctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctgagacattcaattccttgagtctaccaagaatctcattgtatacttca |
8453414 |
T |
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| Q |
736 |
attttgagactctcaatccgaccacgactccatccacaattgatcaaagctctactgttgcaact |
800 |
Q |
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| T |
8453415 |
attttgagactctcaatccgaccacgactccatccacaattgatcaaagctctactgttgcaact |
8453479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 627
Target Start/End: Original strand, 53664042 - 53664103
Alignment:
| Q |
566 |
gtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcataccta |
627 |
Q |
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| T |
53664042 |
gtaaccttttatgcataaggacatattgagccctctccacattcatatccaatgcataccta |
53664103 |
T |
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