View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_21 (Length: 340)
Name: NF3765_high_21
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 43868010 - 43868316
Alignment:
| Q |
20 |
catggcacagtggattcacaaggaaagcaagaactccccgccacaacaaaaattcgtcgattcaacaacaacaacaacgtctcaaggaaaaagttctctt |
119 |
Q |
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| T |
43868010 |
catggcacagtggattcacaaggaaagcaagaactccccgccacaacaaaaattcgtcgattcaacaacaacagcaacgtctcaaggaaaaagttctctt |
43868109 |
T |
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| Q |
120 |
caatactagttttcttccacttgttcctgaactcggaggtgaagaagaacaaggacaagaactacttgttgatattgacgaggctgatgaggagcagttg |
219 |
Q |
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| T |
43868110 |
caatactagttttcttccacttgttcctgaactcggaggtgaagaagaacaaggacaagaactacttgttgatattgatgaggctgatgaggagcagttg |
43868209 |
T |
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| Q |
220 |
ctgtgtcgtgtgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868210 |
ctgtgtcgtgtgccagttttcgatgccaacccttttgatttagagacttgtactgtgaaaaatgatgctgttgattttgaggaaatgtgtgacttggata |
43868309 |
T |
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| Q |
320 |
gtttctg |
326 |
Q |
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||||||| |
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| T |
43868310 |
gtttctg |
43868316 |
T |
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