View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_22 (Length: 337)
Name: NF3765_high_22
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 44838018 - 44837700
Alignment:
| Q |
1 |
ttgcgcagattcagcgattttcttgacttgttttctcaagtgagtttcaattcaaatctacaacttcatttcaacatactatgtcctatgttgataaggg |
100 |
Q |
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| T |
44838018 |
ttgcgcagattcagcgattttcttgacttgttttctcaagtgagtttcaattcaaatctacaacttcatttcaacatactatgtcctatgttgataaggg |
44837919 |
T |
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| Q |
101 |
cttatgctatatgttacaagtttagttgtttatccatacatacatgccttatatatatgatacaatattaaactgttattattctattcatcttgttttt |
200 |
Q |
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| T |
44837918 |
cttatgctatatgttacaagtttagttgtttatccatacatacatgcctt----atatgatacaatattaaactgttat-----tattcatcttgttttt |
44837828 |
T |
|
| Q |
201 |
ctannnnnnnncagctcaaaaaggaatttcccatgaaatacctgccttcgccaccaccgaaaaagatactgagaattaaaagtgaagctcttttagaaga |
300 |
Q |
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| T |
44837827 |
ctattttttttcagctcaaaaaggaatttcccatgaaatacctgccttcgccaccaccgaaaaagatactgagaattaaaagtgaagctcttttagaaga |
44837728 |
T |
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| Q |
301 |
ggtacataacctctcttcaccctttgct |
328 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
44837727 |
ggtacataacctctcttcaccttttgct |
44837700 |
T |
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