View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_29 (Length: 263)
Name: NF3765_high_29
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_29 |
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| [»] scaffold0311 (2 HSPs) |
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Alignment Details
Target: scaffold0311 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 8058 - 8105
Alignment:
| Q |
205 |
atgaggctcttgaggaggttgctgccgaggagcagggagaccaccaac |
252 |
Q |
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| T |
8058 |
atgaggctcttgaggaggttgctgccgaggagcagggagaccaccaac |
8105 |
T |
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Target: scaffold0311; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 2880 - 2921
Alignment:
| Q |
13 |
aatatgaggatcaaagtgttgaggacagactcctatatatcc |
54 |
Q |
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| T |
2880 |
aatatgaggatcaaagtgttgaggacacactcctatatatcc |
2921 |
T |
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