View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_3 (Length: 669)
Name: NF3765_high_3
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 141 - 599
Target Start/End: Original strand, 38136488 - 38136946
Alignment:
| Q |
141 |
acacatagatgagtgtacagtgatgtagttatacatgtacagtaaaggtgccacatcagcatgagttagttagaatctaacaaactctaacagattctta |
240 |
Q |
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| T |
38136488 |
acacatagatgagtgtacagtgatgtatttatacatgtacagtaaaggtaccacatcagcatgagttagttagaatctaacaaactctaacagattctta |
38136587 |
T |
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| Q |
241 |
catggtcaaactaaacaaccacttatcagttagttaaagagtatcctacgatctattaannnnnnnnn---------gtgttaaccctcaggtggtaagg |
331 |
Q |
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| T |
38136588 |
catggtcaaactaaacaaccacttatcagttagttaaagagtatcctacgatctattaatttttttttattttttttgtgttaaccctcaggtggtaagg |
38136687 |
T |
|
| Q |
332 |
ggaatggacaacggttaagtaaagtttgatcaaaattgttccatccacgaattgaactctggttctccagaagaactatcatttttgtggaactcgttaa |
431 |
Q |
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| T |
38136688 |
ggaatggacaacggttaagtaaagtttgatcaaaattgttccatccacgaatcgaactctggttctccagaagaactatcattttcgtggaactcgttaa |
38136787 |
T |
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| Q |
432 |
ccacttgaactcataaactgaacttggatgacaaagtatttttccctaaaatattgaagcatgaatgtttttggaagtgaagatagttagttaccttgga |
531 |
Q |
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| T |
38136788 |
ccacttgaactcataaactgaacttggatgaaaaagtatgtttccctaaaatattgaagcatgaatgtttttggaagtgaagatagttagttaccttgga |
38136887 |
T |
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| Q |
532 |
ttgagattggcaaaagatacgaaaggaacgagttcgagaaaggttgatagaagtggtgaagctgtggc |
599 |
Q |
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| T |
38136888 |
ttgagattggcaaaagat---------acgagttcgagaaaggttgatagaagtggtgaagctgtggc |
38136946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 38136363 - 38136463
Alignment:
| Q |
9 |
gacatcatcattaccagaaagcaatgaactttctaataaaggggagaaccttcttatctataatagagaaactgtttgagataaaaactcattctataga |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38136363 |
gacaccatcattaccagaaagcaatgaactttctaataaaggggagaaccttcttatctataatagagaaactgtttgagat-aaaactcattctataga |
38136461 |
T |
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| Q |
109 |
at |
110 |
Q |
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|| |
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| T |
38136462 |
at |
38136463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 38123167 - 38123200
Alignment:
| Q |
34 |
gaactttctaataaaggggagaaccttcttatct |
67 |
Q |
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| T |
38123167 |
gaactttctaataaaggggaaaaccttcttatct |
38123200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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