View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3765_high_4 (Length: 610)
Name: NF3765_high_4
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 231 - 592
Target Start/End: Complemental strand, 46232952 - 46232591
Alignment:
| Q |
231 |
tcagaaaagaaaatttatgtctgtattgtcatgagttgaatttggtagaatggctgcaaatatttgagcttatttataagtctaagttgcaggatatttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46232952 |
tcagaaaagaaaatttatgtctgtattgtcatgagttgaatttggtagaatggctgcaaatatttgagcttatttataagtctaagttgcaggatatttt |
46232853 |
T |
|
| Q |
331 |
actagtggcacgttgggatcggatgaggaggcggtagctaacaatgaacaaggagggaatgataaatgatttaggcatattgaacttgtgtaggtttggt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46232852 |
actagtggcacgttgggatcggatgaggaggcggtagctaacaatgaacaaggagggaatgatcaatgatttaggcatattgaacttgtgtaggtttggt |
46232753 |
T |
|
| Q |
431 |
atatggaatattgaactttggtgccatcttcataagtcgagatcataaagttgggtcgtgtacgtatactttgttggatttgacatgttgattgatcata |
530 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46232752 |
atatggaatattgaactttggtcccatcttcataagtcgagatcataaagttgggtcgtgtacgtatactttgttggatttgacatgttgattgatcata |
46232653 |
T |
|
| Q |
531 |
tgtattttaagtgtacgtagagcaatttttgaggatgcactctattatgcagctaggttatt |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46232652 |
tgtattttaagtgtacgtagagcaatttttgaggatgcactctattatgcagctaggttatt |
46232591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 46233110 - 46232975
Alignment:
| Q |
96 |
atgatatataacattataagaatattgaatttcctttctaggggtttctactacaacaagaacaaaagataaaatttgtatttcctaatttagctcacca |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233110 |
atgatatataacattataagaatattgaatttcctttctaggggtttctactacaacaagaacaaaagataaaatttgtatttcctaatttagctcacca |
46233011 |
T |
|
| Q |
196 |
cttttatgaatcaaatgttgtacagtgtttgggagt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233010 |
cttttatgaatcaaatgttgtacagtgtttgggagt |
46232975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 46233189 - 46233155
Alignment:
| Q |
17 |
taggagagtgcaagtaatttgaaaaaattgaaata |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233189 |
taggagagtgcaagtaatttgaaaaaattgaaata |
46233155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University