View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_6 (Length: 543)
Name: NF3765_high_6
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 29240906 - 29240398
Alignment:
| Q |
15 |
gaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttac |
114 |
Q |
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| T |
29240906 |
gaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttac |
29240807 |
T |
|
| Q |
115 |
tagttgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaa |
214 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29240806 |
cagctgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatcta----tctagtaagaacccctcacaaaaataaaaa |
29240711 |
T |
|
| Q |
215 |
tgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaatnnnnnnnngtaataattacctttcaatgactgtaagca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29240710 |
tgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaat-aaaaaaagtaataattacctttcaatgactgtaagca |
29240612 |
T |
|
| Q |
315 |
aatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
29240611 |
aatttgttggatgatatttatctttcaacctatataaaaagcaaaacgagaaacggaattcaacatcagattgtgtggacatccaaaaatacggcaattc |
29240512 |
T |
|
| Q |
415 |
atagtttgacagtaaacatttaaagattgaaaactacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaa |
514 |
Q |
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| T |
29240511 |
atagtttgacagtaaacatttaaagattgaaaactacagattgttagagaatagagaatataaagatatgtatcactcctcatccttatgagcattgaaa |
29240412 |
T |
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| Q |
515 |
taagctcttttttg |
528 |
Q |
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|||||||||||||| |
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| T |
29240411 |
taagctcttttttg |
29240398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 31 - 528
Target Start/End: Complemental strand, 16828433 - 16827934
Alignment:
| Q |
31 |
gcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactt |
130 |
Q |
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||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |
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| T |
16828433 |
gcacaaacaagcgtaagtaaaaaagaggacaagaacttacggatctaatgttccactttgcaaatcaagcaaaaaatcctttgccagctgtcgagcactt |
16828334 |
T |
|
| Q |
131 |
tcattcg-cctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagatt |
229 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||| |||| | ||||| ||||| || |||||||||||||||| ||||||||| |
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| T |
16828333 |
tcattcctcctaaaatatatgaagaaataaaaattagaatccacctatttatcga----gtaagcaccccccataaaaataaaaatgatccattaagatt |
16828238 |
T |
|
| Q |
230 |
agcaggacaatacgttatgcttttcaatagaactctaaaattgaaatnnnnnnnng-----taataattacctttcaatgactgtaagcaaatttgttgg |
324 |
Q |
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| |||||||| |||||||| |||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||| |
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| T |
16828237 |
aacaggacaacacgttatgtttttcaatagaactgtaaaattgatataaaaaaaataataataagaattacctttcaatgactgtaagcaaatttgttgg |
16828138 |
T |
|
| Q |
325 |
atgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttgac |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
16828137 |
atgatatttatctttcaacctatataaaaagtaaaacgagaaagggaaatcaacatcagattgtgtggacttacaaaaatatggcaattcatagttttac |
16828038 |
T |
|
| Q |
425 |
agtaaacatttaaagattgaaaactacagattgttagagaatagagaatataaagatatgtaccactcctcatccttatgagcattgaaataagctcttt |
524 |
Q |
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|| ||||||||||||||||||||||||||| |||| | || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16828037 |
aggaaacatttaaagattgaaaactacagactgttttataacagagaatataaagatacgtaccactcctcatccttatgagcactgaaataagctcttt |
16827938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 846375 - 846427
Alignment:
| Q |
294 |
acctttcaatgactgtaagcaaatttgttggatgatatttatctttcaaccta |
346 |
Q |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
846375 |
acctttcaattactgtaagtaaatttgttggatgatacttatctttcaaccta |
846427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 846142 - 846199
Alignment:
| Q |
55 |
gaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatccttt |
112 |
Q |
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|||||||| ||| |||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
846142 |
gaggacaaaaacatacatgtctagtgttccactttgcaaatcaagcaaaaactccttt |
846199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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