View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_high_7 (Length: 504)
Name: NF3765_high_7
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 5811875 - 5811418
Alignment:
| Q |
20 |
aaccgtagcccagctagtgaatgtgaagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5811875 |
aaccgtagcccagctagtgaatgtgaagaaaattgtggtaataacccttccgaa-------------gtggtgcccaagagttagatctagagggccaag |
5811789 |
T |
|
| Q |
120 |
aagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcc |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5811788 |
aagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaagaagttcc |
5811689 |
T |
|
| Q |
220 |
tgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttattatttttctactgaataaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5811688 |
tgagtcgtgtcgactgtttgtacgtaatctgccatacacgaccacgtactttcatagtgtttttcctgcttttccatttattatttttctactgaatgaa |
5811589 |
T |
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| Q |
320 |
tatgtcttctgatagttaattttttatcttactaatatctttcaatgattttgtcatttcaattgatcttaatatattaatcatgtgttggttttatcat |
419 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5811588 |
tatgtcttccgacagttaattttttatcttactaatatctttcaatgattttgtcatttcaa---atcttaatatattaatcatgtgttggttttatcat |
5811492 |
T |
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| Q |
420 |
tttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
493 |
Q |
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| T |
5811491 |
tttattgttattatgttgcagggaggaagaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
5811418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 37743434 - 37743205
Alignment:
| Q |
43 |
tgaagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgtt |
142 |
Q |
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|||||||||| | ||||||||||||| |||| || |||| |||||||||| ||||||||||||||||| | |||| || |||| | ||| |||||||| |
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| T |
37743434 |
tgaagaaaatcgttgtaataacccttctgaaacaaccccaagaagtggtgctcaagagttagatctagaagaccaaaaaaataccgttggaaaggatgtt |
37743335 |
T |
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| Q |
143 |
gccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtac |
242 |
Q |
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| T |
37743334 |
gccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtcc |
37743235 |
T |
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| Q |
243 |
gtaatctgccatacacgaccacgtactttc |
272 |
Q |
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| T |
37743234 |
gtaatctgccatattcgaccacgtaatttc |
37743205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 45 - 267
Target Start/End: Complemental strand, 37764615 - 37764393
Alignment:
| Q |
45 |
aagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgc |
144 |
Q |
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|||||||| |||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||| || |
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| T |
37764615 |
aagaaaatcgtggtaataacccttttgaaagaacaccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagc |
37764516 |
T |
|
| Q |
145 |
caatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtacgt |
244 |
Q |
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||||||||||||||||| || | |||| |||||||||| | |||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| ||| |
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| T |
37764515 |
caatgataagtctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaagataagaaaggagtttctgagccgtgtcgactgtttgtccgt |
37764416 |
T |
|
| Q |
245 |
aatctgccatacacgaccacgta |
267 |
Q |
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||||||||||| |||||||||| |
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| T |
37764415 |
aatctgccatattcgaccacgta |
37764393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 38601699 - 38601928
Alignment:
| Q |
43 |
tgaagaaaattatggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgtt |
142 |
Q |
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|||||||||| ||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| | ||||||| ||||| | ||| ||||||| |
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| T |
38601699 |
tgaagaaaatcgtggtaataaccctgttgaaagaaccccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgta |
38601798 |
T |
|
| Q |
143 |
gccaatgataagtctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaataagttcctgagtcgtgtcgactgtttgtac |
242 |
Q |
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||||||||||||||||||| || |||||| |||||||||| | ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||| | |
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| T |
38601799 |
gccaatgataagtctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaatataagaaaggagtttctgagccgtgtcgactgtttgtcc |
38601898 |
T |
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| Q |
243 |
gtaatctgccatacacgaccacgtactttc |
272 |
Q |
| |
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|||||||||||| |||||||||| |||| |
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| T |
38601899 |
ttaatctgccatattcgaccacgtaatttc |
38601928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 38602054 - 38602141
Alignment:
| Q |
406 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
493 |
Q |
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| T |
38602054 |
gttggttttatatttttattgttattctgttgcagtgaggaggaactggaagagcatttcagtcagtttggcagtgtctcacaggttc |
38602141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 37743079 - 37742995
Alignment:
| Q |
406 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacagg |
490 |
Q |
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| T |
37743079 |
gttggttttatatttttattgttattctgttgcagtgaggaggaattggaagagcatttcagtcagtttggcagtgtctcacagg |
37742995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 37758514 - 37758427
Alignment:
| Q |
406 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
493 |
Q |
| |
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||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
37758514 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttc |
37758427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 37764262 - 37764175
Alignment:
| Q |
406 |
gttggttttatcattttattgttattatgttgcagggaggaggaactggaagagtatttcagtcagtttggaagtgtctcacaggttc |
493 |
Q |
| |
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||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
37764262 |
gttggttttatatttttattgttattccattgcagtgaggaggaactcgaagagcatttcagtcagtttggcagtgtctcacaggttc |
37764175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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