View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_11 (Length: 430)
Name: NF3765_low_11
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 139 - 414
Target Start/End: Original strand, 9166226 - 9166513
Alignment:
| Q |
139 |
aggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatcttcatcttcctctc |
238 |
Q |
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| T |
9166226 |
aggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatcttcatcttcctctc |
9166325 |
T |
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| Q |
239 |
ctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
326 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166326 |
ctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
9166425 |
T |
|
| Q |
327 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166426 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
9166513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 197 - 414
Target Start/End: Original strand, 9154867 - 9155096
Alignment:
| Q |
197 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
284 |
Q |
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|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
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| Q |
285 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
384 |
Q |
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| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
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| Q |
385 |
gcagtctttttcctattattcatcttctct |
414 |
Q |
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| T |
9155067 |
gcagtttttttcctatttttcatcttctct |
9155096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 9166105 - 9166196
Alignment:
| Q |
24 |
ccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcacccttttcaa |
115 |
Q |
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| T |
9166105 |
ccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcacccttttcaa |
9166196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 9154705 - 9154791
Alignment:
| Q |
33 |
aaactaaccaaaagtaaattggtaaccttcaacatggattcat----aaatataaaacaaacaaggcaagatactcacccttttcaa |
115 |
Q |
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|||||||| | ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9154705 |
aaactaactagaagtaaactgataaccttcaacatggattcatgaaaaaatataaaacaaacaaggcaaaatactcacccttttcaa |
9154791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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