View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3765_low_17 (Length: 378)

Name: NF3765_low_17

Description: NF3765

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3765_low_17

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 150; E-Value: 3e-79

Query Start/End: Original strand, 49 - 202

Target Start/End: Original strand, 35393845 - 35393998

Alignment:

Q	49	agtttgtgtttgaaattggaaacttcattacactttcacacattttgttggttaccgtaacccaacccccagcacatttatttacgatatcatcatcata	148	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35393845	agtttgtgtttgaaattggaaacttcattgcactttcacacattttgttggttaccgtaacccaacccccagcacatttatttacgatatcatcatcata	35393944	T

Q	149	ataataacatttaacacaacacaacaacaacctcattgtaatttctgaaactca	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35393945	ataataacatttaacacaacacaacaacaacctcattgtaatttctgaaactca	35393998	T

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Target: chr3; HSP #2

Raw Score: 141; E-Value: 8e-74

Query Start/End: Original strand, 224 - 364

Target Start/End: Original strand, 35394029 - 35394169

Alignment:

Q	224	attgtggatctcgaataagatggggattgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatca	323	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35394029	attgtggatctcgaataagatggggattgcagaagagagagttgtggcggttatcatggttggaggacccaccaaaggcactcgattccgtccattatca	35394128	T

Q	324	ttcaacattcctaaaccactctttccattagctggacaacc	364	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35394129	ttcaacattcctaaaccactctttccattagctggacaacc	35394169	T

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