View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3765_low_20 (Length: 366)

Name: NF3765_low_20
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3765_low_20
NF3765_low_20
[»] chr8 (3 HSPs)
chr8 (9-348)||(4184366-4184705)
chr8 (136-193)||(7619470-7619527)
chr8 (175-207)||(1766449-1766481)
[»] chr7 (1 HSPs)
chr7 (156-207)||(23719512-23719563)
[»] chr6 (1 HSPs)
chr6 (155-207)||(12124215-12124267)
[»] chr2 (1 HSPs)
chr2 (153-198)||(35362848-35362893)
[»] chr3 (1 HSPs)
chr3 (179-207)||(40275801-40275829)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 4184366 - 4184705
Alignment:
Q  9 gatttttatgatttcaagtggtttttaaacatctttaccnnnnnnnttatgtagtttaaacaccccctcaaaggaggagannnnnnnnnnc-tctataat 107  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||| ||||||||            |||||||     
T  4184366 gatttttatgatttcaagtggtttttaaacatctttaccaaaaaaattatgtagtttaaacacccc-tcaagggaggagaatttttttttggtctataaa 4184464  T
Q  108 tgaagtggtaaagatccctgaaacttgaacacaatgcaaggtattgagtttgaactcagatgaatatgttcaacctaacaattttgacattgtcagttga 207  Q
    | || || |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || ||||    
T  4184465 ttaaatgataaagatcactgaaacttgaacacaatgcaaggtattgagtttaaactcggatgaatatgttcaacctaacaattttggcattgccaattga 4184564  T
Q  208 catagaggagaatttaatttaatttacatatttatttctacagtgagggaggtctaaatctaaacattggagagatgaaatgaatataattttaacattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4184565 catagaggagaatttaatttaatttacatatttatttctacagtgagggaggtctaaatctaaacattggagagatgaaatgaatataattctaacattc 4184664  T
Q  308 atttcaagagaagagagtataatgtactcttaataggggtg 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4184665 atttcaagagaagagagtataatgtactcttaataggggtg 4184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 7619470 - 7619527
Alignment:
Q  136 acacaatgcaaggtattgagtttgaactcagatgaatatgttcaacctaacaattttg 193  Q
    ||||| |||||||| ||  ||| ||| ||||||||| |||||||||||||||||||||    
T  7619470 acacattgcaaggtcttaggttcgaattcagatgaagatgttcaacctaacaattttg 7619527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 1766481 - 1766449
Alignment:
Q  175 gttcaacctaacaattttgacattgtcagttga 207  Q
    |||||| ||||||||||||||||||||||||||    
T  1766481 gttcaatctaacaattttgacattgtcagttga 1766449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 23719563 - 23719512
Alignment:
Q  156 tttgaactcagatgaatatgttcaacctaacaattttgacattgtcagttga 207  Q
    ||||||||| |||||| ||||||||| ||||||| |||||||||||||||||    
T  23719563 tttgaactcggatgaagatgttcaacttaacaatattgacattgtcagttga 23719512  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 12124215 - 12124267
Alignment:
Q  155 gtttgaactcagatgaatatgttcaacctaacaattttgacattgtcagttga 207  Q
    |||| ||||| ||||||  ||||||||||||| ||||||||||||||||||||    
T  12124215 gtttaaactcggatgaaggtgttcaacctaacgattttgacattgtcagttga 12124267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 35362848 - 35362893
Alignment:
Q  153 gagtttgaactcagatgaatatgttcaacctaacaattttgacatt 198  Q
    |||||||||||||||| ||| ||| |||| ||||||||||||||||    
T  35362848 gagtttgaactcagataaatgtgtacaacgtaacaattttgacatt 35362893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 40275829 - 40275801
Alignment:
Q  179 aacctaacaattttgacattgtcagttga 207  Q
    |||||||||||||||||||||||||||||    
T  40275829 aacctaacaattttgacattgtcagttga 40275801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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