View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_25 (Length: 331)
Name: NF3765_low_25
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 9166514 - 9166834
Alignment:
| Q |
1 |
tctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgag |
100 |
Q |
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| T |
9166514 |
tctgcttcctccaaagttaattgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgaa |
9166613 |
T |
|
| Q |
101 |
cagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactcc |
200 |
Q |
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| T |
9166614 |
cagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactac |
9166713 |
T |
|
| Q |
201 |
ttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9166714 |
ttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcc |
9166813 |
T |
|
| Q |
301 |
tgttcttgtacttctcctatg |
321 |
Q |
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||||||||||||||||||||| |
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| T |
9166814 |
tgttcttgtacttctcctatg |
9166834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 9155097 - 9155415
Alignment:
| Q |
1 |
tctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattgag |
100 |
Q |
| |
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||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||| | || ||||||| ||||||| |||||||||||||| ||||| |
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| T |
9155097 |
tctgcttcctctaaagtcaattgcttatattgtgcaaccttgttaaagttgtacctacaaaaaagcatgccaaactttgcatcatcctactgtctttgag |
9155196 |
T |
|
| Q |
101 |
cagtaataaacacagataagaaaataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactcc |
200 |
Q |
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|||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
9155197 |
cagtaacaaacacagataagaaaaggaagataaaacca---tccactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactcc |
9155293 |
T |
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| Q |
201 |
ttctttcccttcataagcaggtaatatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcc |
300 |
Q |
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|||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9155294 |
ttcttttccttcattagcaggtaatacgtagctgattgtgaaccttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcc |
9155393 |
T |
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| Q |
301 |
tgttcttgtacttctcctatgc |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
9155394 |
tgttcttgtacttctcctatgc |
9155415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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