View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_28 (Length: 292)
Name: NF3765_low_28
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 34 - 275
Target Start/End: Complemental strand, 40373797 - 40373556
Alignment:
| Q |
34 |
acttaaattgaaatttgtgtttatttaaatctcaaaaccataaaattatcttttataattctgagtttttattacgacaaccactgactacttcttctac |
133 |
Q |
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| T |
40373797 |
acttaaattgaaatttgtgtttatttaaatctcaaaaccataaaattatcttttataattctgagtttttattacgacaaccactgactacttcttctac |
40373698 |
T |
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| Q |
134 |
tattattaatcactactttgaccaccactcatgccgcctttggtcactattctcattacctctgaccaccactctgatgctacctcgaccgttatagcca |
233 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40373697 |
tattattaatcattacttcgaccaccactcatgccgcctttgatcaatattctcattacctctgaccaccactctgatgctacctcgaccgttatggcca |
40373598 |
T |
|
| Q |
234 |
cttcgaccaatcaaccaccactaacaactacttcagcccttc |
275 |
Q |
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| T |
40373597 |
cgtcgaccgatcaaccaccactaacaactacttcagcccttc |
40373556 |
T |
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