View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3765_low_29 (Length: 283)

Name: NF3765_low_29
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3765_low_29
NF3765_low_29
[»] chr4 (11 HSPs)
chr4 (10-268)||(9602678-9602936)
chr4 (26-239)||(9568941-9569160)
chr4 (58-239)||(9574072-9574253)
chr4 (10-268)||(9593869-9594133)
chr4 (10-232)||(9582076-9582304)
chr4 (10-232)||(9587771-9587999)
chr4 (59-197)||(54295229-54295367)
chr4 (59-133)||(37895836-37895910)
chr4 (95-198)||(37897699-37897805)
chr4 (158-198)||(37895753-37895793)
chr4 (9-57)||(37897882-37897930)
[»] chr6 (20 HSPs)
chr6 (59-198)||(29131098-29131237)
chr6 (21-194)||(34281712-34281891)
chr6 (58-198)||(29145083-29145226)
chr6 (59-198)||(29299865-29300007)
chr6 (80-211)||(29012615-29012740)
chr6 (21-133)||(34258359-34258477)
chr6 (63-133)||(23218748-23218818)
chr6 (77-131)||(29123978-29124032)
chr6 (77-133)||(25528975-25529031)
chr6 (82-133)||(26090880-26090931)
chr6 (76-133)||(32960902-32960959)
chr6 (59-132)||(34278596-34278669)
chr6 (81-133)||(29152300-29152352)
chr6 (163-194)||(32960998-32961029)
chr6 (77-131)||(32745027-32745081)
chr6 (19-49)||(34278550-34278580)
chr6 (86-131)||(29137133-29137178)
chr6 (163-195)||(29123896-29123928)
chr6 (163-195)||(29137051-29137083)
chr6 (163-195)||(32745131-32745163)
[»] scaffold0613 (1 HSPs)
scaffold0613 (59-133)||(52-126)
[»] scaffold0134 (1 HSPs)
scaffold0134 (59-133)||(16374-16448)
[»] scaffold0054 (2 HSPs)
scaffold0054 (59-198)||(39967-40100)
scaffold0054 (76-198)||(33633-33749)
[»] chr7 (3 HSPs)
chr7 (58-133)||(42446193-42446268)
chr7 (158-236)||(42446072-42446150)
chr7 (23-133)||(7793675-7793791)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 9602678 - 9602936
Alignment:
Q  10 caatgaaacggacccatttaacaccaccaagtttatccacaaagctttgaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattg 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9602678 caatgaaacggacccatttaacaccaccaagtttatccacaatgctttgaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattg 9602777  T
Q  110 ctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaa 209  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9602778 ctcaagtaaaatgataccaaccatcttccatcttgactatcttcatcttcttcccacaaccaatgacacacaccatccatgtagacttgactgccgtcaa 9602877  T
Q  210 tatgtgccaaggaacaaggcatgtcaaaaataagtatccttttccacgagttagttctt 268  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9602878 taagtgccaaggaataaggcatgtcaaaaataagtatccttttccacgagttagttctt 9602936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 9569160 - 9568941
Alignment:
Q  26 tttaacaccaccaagtttatccacaaagcttt------gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaa 119  Q
    |||||||||||||||||||||||||| ||||       |||||||||||| ||||| ||||| | ||||||||||||||||  |||||||||||||||||    
T  9569160 tttaacaccaccaagtttatccacaatgcttgaacatcgaaacaatcatccaagtatgagggaacgggtgttatgaagaatttctcattgctcaagtaaa 9569061  T
Q  120 atgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaatatgtgccaa 219  Q
    ||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||    
T  9569060 atgataccaaacatggtccatcctgactatcttcttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaa 9568961  T
Q  220 ggaacaaggcatgtcaaaaa 239  Q
     ||| |||||||||||||||    
T  9568960 agaataaggcatgtcaaaaa 9568941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 9574253 - 9574072
Alignment:
Q  58 gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatct 157  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||| ||    
T  9574253 gaaactatcatctaagtatgagggtatgggtgttatgaagaattcctcattgctcaagtaaaatgataccaaacatgctcgatcttgactatcttcacct 9574154  T
Q  158 tcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa 239  Q
    ||||||||| | ||||||||||||||||||||| | |||||| |||||||||||  |||||| ||| |||||||||||||||    
T  9574153 tcttcacactatcaatgacacacaccatccatgcaaacttgagtgccgtcaatacctgccaacgaataaggcatgtcaaaaa 9574072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 9593869 - 9594133
Alignment:
Q  10 caatgaaacggacccatttaacaccaccaagtttatccacaaagcttt------gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacc 103  Q
    ||||| || ||||||||||||||||||||||||||||||||| || |       |||||||||||| ||||| ||||| ||||||||||||||||| |||    
T  9593869 caatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatcgaaacaatcatccaagtatgagggaatgggtgttatgaagaacacc 9593968  T
Q  104 tcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtagacttgactgc 203  Q
    ||||||||||||||||| ||||||||||||  ||| ||     |||| ||| ||||||||  |||||||||||||||||||||||||||||||||| |||    
T  9593969 tcattgctcaagtaaaaggataccaaacatggtccctccaaggtatcatcaacttcttcagccaaccaatgacacacaccatccatgtagacttgagtgc 9594068  T
Q  204 cgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttccacgagttagttctt 268  Q
    |||||||| ||||||| |||||||||||| ||||||   |||||||||   |||||||||||||||||    
T  9594069 cgtcaatacgtgccaatgaacaaggcatgccaaaaacattaagtatcc---tccacgagttagttctt 9594133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 9582076 - 9582304
Alignment:
Q  10 caatgaaacggacccatttaacaccaccaagtttatccacaaagctt------tgaaacaatcatctaagtacgagggtatgggtgttatgaagaatacc 103  Q
    ||||| || |||||||||||||||| |||||||||||||||| |  |      ||||||||||||||||||| |||||||||  ||||||||||||| ||    
T  9582076 caatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgagggtatgtatgttatgaagaattcc 9582175  T
Q  104 tcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtagacttgactgc 203  Q
    ||||||||||||||||||||||||| ||||  ||| ||  |  |||| ||| ||||||||  |||||||||||||||||||||||||||||||||| |||    
T  9582176 tcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacacaccatccatgtagacttgagtgc 9582275  T
Q  204 cgtcaatatgtgccaaggaacaaggcatg 232  Q
    |||||||| ||||||| ||||||||||||    
T  9582276 cgtcaatacgtgccaatgaacaaggcatg 9582304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 9587771 - 9587999
Alignment:
Q  10 caatgaaacggacccatttaacaccaccaagtttatccacaaagctt------tgaaacaatcatctaagtacgagggtatgggtgttatgaagaatacc 103  Q
    ||||| || |||||||||||||||| |||||||||||||||| |  |      ||||||||||||||||||| |||||||||  ||||||||||||| ||    
T  9587771 caatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgagggtatgtatgttatgaagaattcc 9587870  T
Q  104 tcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtagacttgactgc 203  Q
    ||||||||||||||||||||||||| ||||  ||| ||  |  |||| ||| ||||||||  |||||||||||||||||||||||||||||||||| |||    
T  9587871 tcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacacaccatccatgtagacttgagtgc 9587970  T
Q  204 cgtcaatatgtgccaaggaacaaggcatg 232  Q
    |||||||| ||||||| ||||||||||||    
T  9587971 cgtcaatacgtgccaatgaacaaggcatg 9587999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 54295229 - 54295367
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatctt 158  Q
    ||||||||||||||||  |||| ||||||||||||||| || | |||||||||||||||||||||||||||||||  |||||   || |||||||||       
T  54295229 aaacaatcatctaagtttgaggatatgggtgttatgaaaaacatctcattgctcaagtaaaatgataccaaacatggtccatgcagattatcttcatgca 54295328  T
Q  159 cttcacacaaccaatgacacacaccatccatgtagactt 197  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54295329 cttcacacaaccaatgacacacaccatccatgtagactt 54295367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 37895910 - 37895836
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||| ||||||||||  |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  37895910 aaacagtcatctaagtctgagggtatgggtgttacgaagaacacctcattgctcaggtaaaatgataccaaacat 37895836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 37897805 - 37897699
Alignment:
Q  95 aagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgacta---tcttcatcttcttcacacaaccaatgacacacaccatccatgt 191  Q
    ||||| || |||||||||||||||||||| |||| ||||  ||||||  | |||   ||||||||||||| |||||||||||||||||| ||||||| ||    
T  37897805 aagaacacatcattgctcaagtaaaatgacaccagacatggtccatcagggctatcttcttcatcttctttacacaaccaatgacacactccatccaagt 37897706  T
Q  192 agacttg 198  Q
    |||||||    
T  37897705 agacttg 37897699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 37895793 - 37895753
Alignment:
Q  158 tcttcacacaaccaatgacacacaccatccatgtagacttg 198  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  37895793 tcttcacacaaccaatgacacacttcatccatatagacttg 37895753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 37897930 - 37897882
Alignment:
Q  9 acaatgaaacggacccatttaacaccaccaagtttatccacaaagcttt 57  Q
    |||||| || |||| ||| ||||||| ||||||||||||||||||||||    
T  37897930 acaatgcaatggactcatataacaccgccaagtttatccacaaagcttt 37897882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 29131237 - 29131098
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatctt 158  Q
    ||||||||||||| ||  ||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||  ||||    || | ||||||| ||    
T  29131237 aaacaatcatctacgtctgagggtatgggtgttgtgacgaacacttcattgctcaagtaaaatgataccaaacatggtccaatgggattttcttcatgtt 29131138  T
Q  159 cttcacacaaccaatgacacacaccatccatgtagacttg 198  Q
     |||||||||||||||||||||||||||||| ||||||||    
T  29131137 tttcacacaaccaatgacacacaccatccatatagacttg 29131098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 34281891 - 34281712
Alignment:
Q  21 acccatttaacaccaccaagtttatccacaaagctttga------aacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaa 114  Q
    ||||||||||||||||||||||| |||||   ||||| |      |||||||||||| ||  | |||||||| |||| ||||| | || |||||||||||    
T  34281891 acccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatctacgtctgggggtatggctgttgtgaaggacacttcattgctcaa 34281792  T
Q  115 gtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccatccatgtaga 194  Q
    |||||||||||||||||||  ||||    || |||||| || || |||||||||||||||||||||||| ||||||||||    
T  34281791 gtaaaatgataccaaacatggtccaatgggattatctttatgtttttcacacaaccaatgacacacaccgtccatgtaga 34281712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 29145226 - 29145083
Alignment:
Q  58 gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgact---atcttca 154  Q
    |||||||||||||||||  ||||||||||||||||  ||||| |||||| | |||||||||||||| |||||||||  ||||||  || |    ||||||    
T  29145226 gaaacaatcatctaagtctgagggtatgggtgttactaagaacacctcactactcaagtaaaatgacaccaaacatggtccatcaggattttcttcttca 29145127  T
Q  155 tcttcttcacacaaccaatgacacacaccatccatgtagacttg 198  Q
    |||| |||| |||||||||||||||| ||| ||| ||| |||||    
T  29145126 tctttttcagacaaccaatgacacactccacccaggtatacttg 29145083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 29300007 - 29299865
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatctt---cat 155  Q
    ||||||||||||  || |||||  || |||||||| | ||| ||||||||||||||||||||||| |||||||||  |||| |  | |||| ||   |||    
T  29300007 aaacaatcatcttcgtccgaggaaataggtgttataaggaacacctcattgctcaagtaaaatgacaccaaacatggtccagcggggctatgtttttcat 29299908  T
Q  156 cttcttcacacaaccaatgacacacaccatccatgtagacttg 198  Q
    ||| ||||||||||||||| ||||| |||||||||||||||||    
T  29299907 ctttttcacacaaccaatggcacactccatccatgtagacttg 29299865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 29012740 - 29012615
Alignment:
Q  80 ggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacaca 179  Q
    |||| ||||||| |||||||  |||||||||| |||||||||||||||||||||  | | || |  ||||||||      |||| |||||||||||||||    
T  29012740 ggtaagggtgttgtgaagaacccctcattgctaaagtaaaatgataccaaacatgattcctcattgctatcttc------ttcagacaaccaatgacaca 29012647  T
Q  180 caccatccatgtagacttgactgccgtcaata 211  Q
    | |||||||||||||||||  |||||||||||    
T  29012646 ctccatccatgtagacttgggtgccgtcaata 29012615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 34258359 - 34258477
Alignment:
Q  21 acccatttaacaccaccaagtttatccacaaagctttga------aacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaa 114  Q
    |||||||||||||| ||||||||||||||   ||||| |      |||||||||| | ||| |||||||| |||||| ||||||| || |||||||| ||    
T  34258359 acccatttaacaccgccaagtttatccactttgctttaacatcaaaacaatcatcaacgtatgagggtattggtgttttgaagaacacatcattgcttaa 34258458  T
Q  115 gtaaaatgataccaaacat 133  Q
    || ||||||||||||||||    
T  34258459 gtcaaatgataccaaacat 34258477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 23218748 - 23218818
Alignment:
Q  63 aatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||||||||||  ||  ||||||||||||  ||||| ||||||||||||||||||||||| |||||||||    
T  23218748 aatcatctaagtttgaaagtatgggtgttactaagaacacctcattgctcaagtaaaatgacaccaaacat 23218818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29124032 - 29123978
Alignment:
Q  77 gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac 131  Q
    ||||||||||||||||||||||| || || |||||||||||||| ||||||||||    
T  29124032 gagggtatgggtgttatgaagaacacttcgttgctcaagtaaaacgataccaaac 29123978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 25528975 - 25529031
Alignment:
Q  77 gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    |||| ||||||||||| || ||| |||||||||||||||| ||||||||||||||||    
T  25528975 gaggatatgggtgttaggacgaacacctcattgctcaagttaaatgataccaaacat 25529031  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 26090880 - 26090931
Alignment:
Q  82 tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||| ||||    
T  26090880 tatgggtgttataaagaacacctcattgctcaagttaaatgataccagacat 26090931  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 32960902 - 32960959
Alignment:
Q  76 cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    |||| ||||||||||||  | ||| |||||||||||||| ||||||||||||||||||    
T  32960902 cgagtgtatgggtgttacaaggaacacctcattgctcaaataaaatgataccaaacat 32960959  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 34278596 - 34278669
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaaca 132  Q
    |||||||||||||  | || ||| ||||||||| ||||| |  | |||||||||||||||||||||||||||||    
T  34278596 aaacaatcatctacttccgggggaatgggtgttgtgaaggacgcttcattgctcaagtaaaatgataccaaaca 34278669  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 29152300 - 29152352
Alignment:
Q  81 gtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||||||||| ||| | | || ||||||||||||||||||||||||||||||    
T  29152300 gtatgggtgttgtgagggacacttcattgctcaagtaaaatgataccaaacat 29152352  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 32960998 - 32961029
Alignment:
Q  163 acacaaccaatgacacacaccatccatgtaga 194  Q
    ||||||||||||||||||||||||||||||||    
T  32960998 acacaaccaatgacacacaccatccatgtaga 32961029  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 32745027 - 32745081
Alignment:
Q  77 gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac 131  Q
    ||||||| |||||||||||||||  | || |||||||||||||| ||||||||||    
T  32745027 gagggtacgggtgttatgaagaacccttctttgctcaagtaaaacgataccaaac 32745081  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 34278550 - 34278580
Alignment:
Q  19 ggacccatttaacaccaccaagtttatccac 49  Q
    |||||||||||||||||||||||||||||||    
T  34278550 ggacccatttaacaccaccaagtttatccac 34278580  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 29137178 - 29137133
Alignment:
Q  86 ggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac 131  Q
    |||||||||||||| || ||| ||||||||||||| ||||||||||    
T  29137178 ggtgttatgaagaacacttcactgctcaagtaaaacgataccaaac 29137133  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 29123928 - 29123896
Alignment:
Q  163 acacaaccaatgacacacaccatccatgtagac 195  Q
    |||||||||||||||||| ||||||||||||||    
T  29123928 acacaaccaatgacacactccatccatgtagac 29123896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 29137083 - 29137051
Alignment:
Q  163 acacaaccaatgacacacaccatccatgtagac 195  Q
    |||||||||||||||||| ||||||||||||||    
T  29137083 acacaaccaatgacacactccatccatgtagac 29137051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 32745131 - 32745163
Alignment:
Q  163 acacaaccaatgacacacaccatccatgtagac 195  Q
    |||||||||||||||||| ||||||||||||||    
T  32745131 acacaaccaatgacacactccatccatgtagac 32745163  T

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Target: scaffold0613 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 126 - 52
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  126 aaacaatcatctaagtttgagggtatgggtgttattaagaacacctcattgctcaagtaaaatgacaccaaacat 52  T

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Target: scaffold0134 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 16374 - 16448
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||||||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  16374 aaacaatcatctaagtttgagggtatgggtgttattaagaacacctcattgctcaagtaaaatgacaccaaacat 16448  T

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Target: scaffold0054 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 39967 - 40100
Alignment:
Q  59 aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatctt 158  Q
    ||||||||||||   | ||||||||||||||||||  |||| |||||||| ||||||||||||||||| ||||||  |||| |  |  ||  |||    |    
T  39967 aaacaatcatcttcatccgagggtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggtccagcaggggta--ttc----t 40060  T
Q  159 cttcacacaaccaatgacacacaccatccatgtagacttg 198  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  40061 cttcacacaaccaatgacacactccatccatgtagacttg 40100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 33633 - 33749
Alignment:
Q  76 cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatga 175  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||||||||| ||||||  |||| |  |  ||  |||    ||||||||||||||||||    
T  33633 cgagggtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggtccagcaggggta--ttc----tcttcacacaaccaatga 33726  T
Q  176 cacacaccatccatgtagacttg 198  Q
    ||||| |||||||||||||||||    
T  33727 cacactccatccatgtagacttg 33749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 42446268 - 42446193
Alignment:
Q  58 gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat 133  Q
    ||||||| |||||||||  |||||||| |||||  |||||||||| ||||||||||||| ||||||||||||||||    
T  42446268 gaaacaaccatctaagtctgagggtataggtgtggtgaagaatacatcattgctcaagtcaaatgataccaaacat 42446193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 42446150 - 42446072
Alignment:
Q  158 tcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaa 236  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||| ||||||  | |||| ||| ||||||||||||    
T  42446150 tcttcacacaaccaatgacacactccatccatgtagacttgggtgccctcaatacattccaaagaataaggcatgtcaa 42446072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 7793791 - 7793675
Alignment:
Q  23 ccatttaacaccaccaagtttatccacaaagctttgaa------acaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagt 116  Q
    ||||||||||||||||| ||||||||| ||||||| ||      ||||||||||   |  || ||||| ||||||||||||||  |||||||||||||||    
T  7793791 ccatttaacaccaccaaatttatccacgaagctttaaatttaaaacaatcatcttcatctgaaggtataggtgttatgaagaacgcctcattgctcaagt 7793692  T
Q  117 aaaatgataccaaacat 133  Q
    |||| |||| |||||||    
T  7793691 aaaaagatagcaaacat 7793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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