View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_30 (Length: 281)
Name: NF3765_low_30
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 5654899 - 5655158
Alignment:
| Q |
19 |
aggtaccaaaaatgcagctatggtgcagtagaagttaacaaacctgccaaagagcttgaggtatataaagctattgctttaatttgtttaacacacatga |
118 |
Q |
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| T |
5654899 |
aggtaccaaaaatgcagctatggtgcagtagaagttaacaaacctgccaaagagcttgaggtatataaagctattgctttaatttgtttaacacacatga |
5654998 |
T |
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| Q |
119 |
ttatagcatatggccctattcaaataaacaacttcattaagcatttatagcctaagtgcttatcatatactacttttgtccttagttataagccctttga |
218 |
Q |
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| T |
5654999 |
ttatagcatttggccctattcaaataaacaacttcattaagcatttatagcctaagtgcttatcatatactaccttcgtccctagttataagccctttga |
5655098 |
T |
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| Q |
219 |
agaaaattttgtgcgaagtataagccatatacaatttactatgtgcatttcatctctctc |
278 |
Q |
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| T |
5655099 |
agaaaattttgtgctaagtataagccatatgcaatttactatgtgcattttatctctctc |
5655158 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 39392843 - 39392798
Alignment:
| Q |
142 |
ataaacaacttcattaagcatttatagcctaagtgcttatcatata |
187 |
Q |
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| T |
39392843 |
ataaataacttaattaagcatttatagcataagtgcttatcatata |
39392798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 20982317 - 20982272
Alignment:
| Q |
142 |
ataaacaacttcattaagcatttatagcctaagtgcttatcatata |
187 |
Q |
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| T |
20982317 |
ataaacaacttcattaagtgcttatagcataagtgcttatcatata |
20982272 |
T |
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