View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_31 (Length: 268)
Name: NF3765_low_31
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 29427898 - 29428138
Alignment:
| Q |
18 |
aatatattagttgatttaactatttaactaatacaagcttgatacaaggttgtnnnnnnnnnnnnnnnnngtttgcagttgcatacacatcaaataactt |
117 |
Q |
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| T |
29427898 |
aatatattagttgatttaactatttaactaatacaagcttgatacaaggttgttatatat----------gtttgcagttgcatacacatcaaataactt |
29427987 |
T |
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| Q |
118 |
agct-agtatcctgctcagctcttacctttt-cttttcctgactaattttacagcaatctgaaca-------agcattgaatatgttatgaatttcctaa |
208 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
29427988 |
agctcagtatcctgctcagctcttacctttttcttttcctgactaattttacagcaatcttaacaaataacaagcattgaatatattatgaatttcctaa |
29428087 |
T |
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| Q |
209 |
ctaacaaccatacaacaccaaccaaggaggtaataatatcataagaataat |
259 |
Q |
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| T |
29428088 |
ctaacaaccatacaacaccaaccaaggaggtaataatatcataagaataat |
29428138 |
T |
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