View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3765_low_33 (Length: 257)
Name: NF3765_low_33
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 2628485 - 2628717
Alignment:
| Q |
9 |
agcagagataatagttgatgagtggggactaaatgagtttggagttatataggtaatggtgaaaggaagggtacatgaatatattagaaattatgtttat |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628485 |
agcaaagataagagttgatgagtggggactaaatgagtttggagttatataggtaatggtgaaaggaagggtacatgaatatattagaaattatgtttat |
2628584 |
T |
|
| Q |
109 |
tttattttagtgatcggagagaaacaatggatgtggaccaatatggtgtcttggcctcatcagacactaatgtcagagaagattggcaataaggttattg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628585 |
tttattttagtgatcggagagaaacaatggatgtggaccaatatggtgtcttggcctcatcagacactaatgtcagagaagattggcaataaggttattg |
2628684 |
T |
|
| Q |
209 |
ccatttttgatgcctggttggtggtggccaaac |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2628685 |
ccatttttgatgcctggttggtggtggccaaac |
2628717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University