View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_35 (Length: 250)
Name: NF3765_low_35
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 27761937 - 27761715
Alignment:
| Q |
13 |
cagaccaaacataaatcatcataatttaaaaattagaaatcgtaaaacctacatccgagagagaacatttttcatttacctgtagtgttccacaacttgg |
112 |
Q |
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| T |
27761937 |
cagaccaaacataaatcgtcataatttaaaaattagaaatcataaaacctacatccaagagagaacctttttcatttaccagtagtgttccacaacttgg |
27761838 |
T |
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| Q |
113 |
taagcttctgaagcaaatcctttgatatgtatgacttatcccctttgtttagcactaaacgaccatgatggtttttccttcaagaagcgagacccttgtc |
212 |
Q |
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| T |
27761837 |
taagcttctgaagcaaatcctttgatatgtatgacttatcccctttgttcagcactaaacgaccatgaaggttttt-cttcaaaaagcgagacccttgtc |
27761739 |
T |
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| Q |
213 |
atatgcttcttgggtcatcttgat |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
27761738 |
atatgcttcttgggtcatcttgat |
27761715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 20268777 - 20268952
Alignment:
| Q |
14 |
agaccaaacataaatcatcataatttaaaaattagaaatcgtaaaacctacatccgagagagaacatttttcatttacctgtagtgttccacaacttggt |
113 |
Q |
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| T |
20268777 |
agaccaaatgtaaatcttcataacttgaaaactaaaaatcataaaacccatgtccaagagagataattttccattttctagtcatgttccataactcgga |
20268876 |
T |
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| Q |
114 |
aagcttctgaagcaaatcctttgatatgtatgacttatcccctttgtttagcactaaacgaccatgatggtttttc |
189 |
Q |
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| T |
20268877 |
aattttcttaaccaaatcctttgttgtgtatggcttgtcccctttgttcaacaccaaacgtccatgaaggtttttc |
20268952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 21055406 - 21055581
Alignment:
| Q |
14 |
agaccaaacataaatcatcataatttaaaaattagaaatcgtaaaacctacatccgagagagaacatttttcatttacctgtagtgttccacaacttggt |
113 |
Q |
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|||||||| |||||| |||||| || |||| || ||||| ||||||| | ||| ||||||| ||||| ||||| | || ||||||| |||| || |
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| T |
21055406 |
agaccaaatgtaaatcttcataacttgaaaactaaaaatcataaaacccatgtccaagagagataattttccattttctagtcatgttccataactcgga |
21055505 |
T |
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| Q |
114 |
aagcttctgaagcaaatcctttgatatgtatgacttatcccctttgtttagcactaaacgaccatgatggtttttc |
189 |
Q |
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|| |||| || ||||||||||| | |||||| ||| ||||||||||| | ||| ||||| |||||| |||||||| |
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| T |
21055506 |
aattttcttaaccaaatcctttgttgtgtatggcttgtcccctttgttcaacaccaaacgtccatgaaggtttttc |
21055581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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