View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3765_low_38 (Length: 230)
Name: NF3765_low_38
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 4230520 - 4230405
Alignment:
| Q |
22 |
gtttttgtatgctatgactttatttcttttcctatttcatattgaaaagagcagtggtggtaatatgnnnnnnncatccttttcaaatttatgtctttag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4230520 |
gtttttgtatgctatgactttatttcttttcttacttcatattgaaaagagcagtggtggtaatatg-atttctcatccttttcaaatttatgtctttag |
4230422 |
T |
|
| Q |
122 |
tatgtagttgtacattg |
138 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
4230421 |
tttgtagttgtacattg |
4230405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 4240035 - 4239920
Alignment:
| Q |
22 |
gtttttgtatgctatgactttatttcttttcctatttcatattgaaaagagcagtggtggtaatatgnnnnnnncatccttttcaaatttatgtctttag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4240035 |
gtttttgtatgctatgactttatttcttttcttacttcatattgaaaagagcagtggtggtaatatg-atttctcatccttttcaaatttatgtctttag |
4239937 |
T |
|
| Q |
122 |
tatgtagttgtacattg |
138 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
4239936 |
tttgtagttgtacattg |
4239920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 4223557 - 4223444
Alignment:
| Q |
19 |
aaagtttttgtatgctatgactttatttcttttcctatttcatattgaaaagagcagtggtggtaatatgnnnnnnncatccttttcaaatttatgtctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
4223557 |
aaagtttttgtatgctatgactttatttcttttcctatttcatattgaaaagagcagtggt---aatatgtttttttcatccttttcaaatttatgtctt |
4223461 |
T |
|
| Q |
119 |
tagtatgtagttgtaca |
135 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
4223460 |
tagtttgtaattgtaca |
4223444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 4248914 - 4248826
Alignment:
| Q |
23 |
tttttgtatgctatgactttatttcttttcctatttcatattgaaaagagcagtggtggtaatatgnnnnnnncatccttttcaaattt |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| ||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
4248914 |
tttttgtatgctatcactttatttcttttcctatttcttatcgaaaagaacaatggtggtaatatgttattctcatccttttcaaattt |
4248826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 4223394 - 4223363
Alignment:
| Q |
185 |
cagctttaattgattgtaaaacagttgatgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4223394 |
cagctttaattgattgtaaaacagttgatgat |
4223363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 20890266 - 20890222
Alignment:
| Q |
20 |
aagtttttgtatgctatgactttatttcttttcctatttcatatt |
64 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
20890266 |
aagtttgtgtatgttatgattttatttcttttcctatttcttatt |
20890222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University