View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3765_low_39 (Length: 226)
Name: NF3765_low_39
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 50408225 - 50408017
Alignment:
| Q |
1 |
acctgctctgatcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408225 |
acctgctctgatcggtacctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctg |
50408126 |
T |
|
| Q |
101 |
cagtgataataatgaaagacaatctgaaacaacttgctcctacacaattcaattcctgacccaattttctttgtactcctttttcaatcaattgcctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50408125 |
cagtgataataatgaaagacaatctgaaacaacttgctcctacacaattcaattcctgacccaattttctttttactcctttttcaatcaattgcctctt |
50408026 |
T |
|
| Q |
201 |
agcttcttt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
50408025 |
agcttcttt |
50408017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 50386178 - 50386078
Alignment:
| Q |
19 |
ctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || || ||||| ||||||||||||| || |||||||| || || || || |||||||||||||||| |
|
|
| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
50386078 |
a |
50386078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 50394601 - 50394484
Alignment:
| Q |
15 |
gtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatg |
114 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| | || || | ||| ||||||||||||| || |||||||| || || || || || ||||||||| |
|
|
| T |
50394601 |
gtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatg |
50394502 |
T |
|
| Q |
115 |
aaagacaatctgaaacaa |
132 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
50394501 |
aaagataacttgaaacaa |
50394484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 41637862 - 41638040
Alignment:
| Q |
31 |
tcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaac |
130 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41637862 |
tcacgtttataaaacttaattgttctagccactaaaataagtgaaataatggcaccaaacaaagtagctacagtgataataatgaaagacaatttgaaac |
41637961 |
T |
|
| Q |
131 |
aacttgctcctacacaattcaattcctgacccaattttctttgtactcctttttcaatcaattgcctcttagcttcttt |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
41637962 |
aacttgctcctgcacaattcaattcctgacccaattttctttcttctccttttccaatcaattgcctcttagcttcttt |
41638040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 39628061 - 39628197
Alignment:
| Q |
9 |
tgatcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgata |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| | |||||||||| |||||||||| |||||||||||||| |
|
|
| T |
39628061 |
tgatcggtacctcttgtatatatcacgtttataaaacttaattgttctagtcaacaaaattactgaaataatgacaccaaacaagttagctgcagtgata |
39628160 |
T |
|
| Q |
109 |
ataatgaaagacaatctgaaacaacttgctcctacac |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| |
|
|
| T |
39628161 |
gacatgaaagacaatttgaaacaacttgctcccacac |
39628197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 41638221 - 41638119
Alignment:
| Q |
52 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcag---tgataataatgaaagacaatctgaaacaacttgctcctacacaat |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
41638221 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagccagagtgatgatgataatgaaagacaatttgaaacaacgtgttcctacacaat |
41638122 |
T |
|
| Q |
149 |
tca |
151 |
Q |
| |
|
||| |
|
|
| T |
41638121 |
tca |
41638119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41637801 - 41637847
Alignment:
| Q |
1 |
acctgctctgatcggtacctcttgtatatatcacctttataaaactt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41637801 |
acctgctctgatcggtacctcttgtatatatcacgtttataaaactt |
41637847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41638675 - 41638631
Alignment:
| Q |
1 |
acctgctctgatcggtacctcttgtatatatcacctttataaaac |
45 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
41638675 |
acctgctctgaccggtacctcttgtatatatcacgtttataaaac |
41638631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University