View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3765_low_5 (Length: 600)
Name: NF3765_low_5
Description: NF3765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3765_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 4184329 - 4184098
Alignment:
| Q |
14 |
gagatccattgaattttctttttgaagaagagatccgttgaaaatagaaagaagaaactcatattccttcctatttttacagttaaaataatgatttgat |
113 |
Q |
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| T |
4184329 |
gagatccattgaattttctttttgaagaagagatccattgaaaatagaaagaagaaactcatattccttcctatttttacggttaaaataatgatttgat |
4184230 |
T |
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| Q |
114 |
taatattgattcaataaaatcaatgaaaaacaaatgagttgaatcttatggcatacgcataatgcatactcatttctccatgtttttgttaaacaagtca |
213 |
Q |
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| T |
4184229 |
taatattgattcaataaaatcaatgaaaaacaaatgagttgaatcttatggcatatgcataatgcatactcatttctccatgtttttgttaaacaagtca |
4184130 |
T |
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| Q |
214 |
ttgtatcaatagaaaggaagactatgaacttc |
245 |
Q |
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| T |
4184129 |
ttgtatcaataaaaaggaagactatgaacttc |
4184098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 4182594 - 4182507
Alignment:
| Q |
323 |
ttcaaacatattgaaatccaatttatgactactatccaagttgctaaacaattggtcttgaattattaatatacaagtggaatgaagt |
410 |
Q |
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| T |
4182594 |
ttcaaacatattgaaatccaatttatgactactatccaagttgctaaacaattggtctcgaattattaatatacaagtggaatgaagt |
4182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 513 - 590
Target Start/End: Complemental strand, 4182404 - 4182327
Alignment:
| Q |
513 |
ttggattctctcacataaaccgctttgtgaacagtgttgagcaacaaccagaccattccaatctcccttgtctctctg |
590 |
Q |
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| T |
4182404 |
ttggattctctcacataaaccgctttgtgaacagtgttgagcaacaaccagaccattccaatctcccttgtctctctg |
4182327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 4184360 - 4184317
Alignment:
| Q |
12 |
atgagatccattgaattttctttttgaagaagagatccgttgaa |
55 |
Q |
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| T |
4184360 |
atgagatccattgaattttctttttgaagaagagatccattgaa |
4184317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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