View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3766_high_11 (Length: 250)
Name: NF3766_high_11
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_high_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 5159405 - 5159645
Alignment:
| Q |
11 |
cagagacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttat-ttgcaaagca |
109 |
Q |
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| T |
5159405 |
cagagacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttatcttgcaaagca |
5159504 |
T |
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| Q |
110 |
tggctatttgtggacccaacaagaagaaagcacatagccaatacctaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159505 |
tggctatttgtggacccaacaagaagaaagcacatagccaataactaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaa |
5159604 |
T |
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| Q |
210 |
accagaaaaaacatcactcattctcagactacacaaaggtc |
250 |
Q |
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| T |
5159605 |
accagaaaaaacatcactcattctcagactacacaaaggtc |
5159645 |
T |
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