View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3766_high_13 (Length: 215)
Name: NF3766_high_13
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 4983160 - 4982979
Alignment:
| Q |
17 |
cataggctatgtatcatcatcgtcatcatcataaactgtttataaagtcagcaaattgccaagcctcacttcctcatcaatttcttccctcccttatggc |
116 |
Q |
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| T |
4983160 |
catagcctatgtatcatcatcgtcatcatcataaactgtttataaagtcaacaaattgccaagcctcacttcctcatcaatttcttccctcccttatggc |
4983061 |
T |
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| Q |
117 |
acaatctcacaaagttcatcaaattttttcaatatcaccaaaaaatgaaacctccccaactacttttcccttcactttcttt |
198 |
Q |
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| T |
4983060 |
acaatctcacaaagttcatcaagttttttcaatatcaccaaaaaatgaaacctccccaactacttttcccttcactttcttt |
4982979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 4979011 - 4978839
Alignment:
| Q |
17 |
cataggctatgtatcatcatcgtcatcatcataaactgtttataaagtcagcaaattgccaagcctcacttcctcatcaatttcttccctcccttatggc |
116 |
Q |
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||||| ||||||||||||||| ||||||||||||| || |||| ||||| ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
4979011 |
catagcctatgtatcatcatcatcatcatcataaaatgcttattaagtctacaaattgccaagcctcatttcctcatcaatttctc---------atggc |
4978921 |
T |
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| Q |
117 |
acaatctcacaaagttcatcaaattttttcaatatcaccaaaaaatgaaacctccccaactacttttcccttcactttcttt |
198 |
Q |
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| T |
4978920 |
aatatctctcaaagttcataaaaatttttcaatagcacctcaaaatgaaacctccccaactacttttcccttcactttcttt |
4978839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 4995693 - 4995621
Alignment:
| Q |
126 |
caaagttcatcaaattttttcaatatcaccaaaaaatgaaacctccccaactacttttcccttcactttcttt |
198 |
Q |
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||||||||||||| || |||||||| ||||| |||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
4995693 |
caaagttcatcaagttctttcaatagcaccacaaaatgaaacctttccaaccacttttcccttaactttcttt |
4995621 |
T |
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