View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3766_high_3 (Length: 497)

Name: NF3766_high_3
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3766_high_3
NF3766_high_3
[»] chr3 (20 HSPs)
chr3 (265-471)||(4856495-4856701)
chr3 (265-471)||(4878230-4878436)
chr3 (16-200)||(4855361-4855545)
chr3 (16-200)||(4877096-4877280)
chr3 (16-200)||(4851024-4851208)
chr3 (265-463)||(4835190-4835384)
chr3 (265-473)||(4841876-4842079)
chr3 (265-461)||(4852524-4852716)
chr3 (16-157)||(4841141-4841282)
chr3 (265-387)||(4826448-4826570)
chr3 (16-160)||(4834409-4834553)
chr3 (355-473)||(4842873-4842987)
chr3 (355-473)||(4868569-4868683)
chr3 (265-378)||(4871576-4871688)
chr3 (265-378)||(4845817-4845929)
chr3 (265-464)||(4860793-4860975)
chr3 (265-464)||(4880800-4880982)
chr3 (437-473)||(4826595-4826631)
chr3 (347-387)||(4837426-4837466)
chr3 (393-462)||(4846018-4846083)
[»] chr7 (1 HSPs)
chr7 (265-358)||(21703749-21703842)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 265 - 471
Target Start/End: Original strand, 4856495 - 4856701
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| ||||  ||||  ||||||||||||  |||||||||||||||||||||||||||    
4856495 ttagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttagagactcaatgtgagtttat 4856592  T
363 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgat 462  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
4856593 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgat 4856692  T
463 cagtaccta 471  Q
    |||| ||||    
4856693 cagtcccta 4856701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 265 - 471
Target Start/End: Original strand, 4878230 - 4878436
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| ||||  ||||  ||||||||||||  |||||||||||||||||||||||||||    
4878230 ttagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttagagactcaatgtgagtttat 4878327  T
363 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgat 462  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
4878328 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgat 4878427  T
463 cagtaccta 471  Q
    |||| ||||    
4878428 cagtcccta 4878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 4855361 - 4855545
Alignment:
16 gagtgaaggatttaattcgggttttatctaagtcattgaccaaaattacatcttggtacacttttaaggagaaaaatggttgtttttccaataatgtttt 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
4855361 gagtgaatgatttaattcgggttttatctaagtcattgaccaaaattacatcttgttacacttttaaggagaaaaatggttgttttcccaataatgtttt 4855460  T
116 ctaatattaaattaatgttgttttctgcattagggatgttaccaatatgttatgttggatttacctttggttctaaggaaccttt 200  Q
    | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||    
4855461 ccaatattaaattaatgttgttttctgccttagggatgttaccaatttgttatgttggagttacctttagtgctaagaaaccttt 4855545  T

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Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 4877096 - 4877280
Alignment:
16 gagtgaaggatttaattcgggttttatctaagtcattgaccaaaattacatcttggtacacttttaaggagaaaaatggttgtttttccaataatgtttt 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
4877096 gagtgaatgatttaattcgggttttatctaagtcattgaccaaaattacatcttgttacacttttaaggagaaaaatggttgttttcccaataatgtttt 4877195  T
116 ctaatattaaattaatgttgttttctgcattagggatgttaccaatatgttatgttggatttacctttggttctaaggaaccttt 200  Q
    | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||    
4877196 ccaatattaaattaatgttgttttctgccttagggatgttaccaatttgttatgttggagttacctttagtgctaagaaaccttt 4877280  T

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Target: chr3; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 4851024 - 4851208
Alignment:
16 gagtgaaggatttaattcgggttttatctaagtcattgaccaaaattacatcttggtacacttttaaggagaaaaatggttgtttttccaataatgtttt 115  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
4851024 gagtgaatgatttaattcggattttatctaagtcattgaccaaaattacatcttgttacacttttaaggagaaaaatggttgttttctcaataatgtttt 4851123  T
116 ctaatattaaattaatgttgttttctgcattagggatgttaccaatatgttatgttggatttacctttggttctaaggaaccttt 200  Q
    | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||    
4851124 ccaatattaaattaatgttgttttctgccttagggatgttaccaatttgttatgttggagttacctttagtgctaagaaaccttt 4851208  T

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Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 265 - 463
Target Start/End: Original strand, 4835190 - 4835384
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||||  ||| |||||||||||| ||||||||||    
4835190 ttagccattttaagaagtgatattattattagtgttggtgcataatacatatggagttaactggttttata--ctaattagagactcaaagtgagtttat 4835287  T
363 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgat 462  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |     |||||||||||||||||| ||||||||    
4835288 ggtcaatcaaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----gtccatgtatttgctactacttgatgat 4835383  T

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Target: chr3; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 265 - 473
Target Start/End: Original strand, 4841876 - 4842079
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||| ||||  || |||||||||||||||  ||| |||||||||||||||||||||||    
4841876 ttagccattttaagaagtgatattattatt-gtgttggtgcataatacatatggaattaactggttttata--ctaattagagactcaatgtgagtttat 4841972  T
363 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgat 462  Q
    ||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||| |||||     |||||||||||||||||||||||||||||    
4841973 ggtcaatctaagttatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttaca----acttccatgtatttgctactagttgatgat 4842068  T
463 cagtacctatc 473  Q
    || || |||||    
4842069 cattaactatc 4842079  T

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Target: chr3; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 265 - 461
Target Start/End: Original strand, 4852524 - 4852716
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| ||||  ||||  ||||||||||||  |||||||||||||||||||||||||||    
4852524 ttagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttata--ctagttagagactcaatgtgagtttat 4852621  T
363 ggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatga 461  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |    ||||||||| |||||||||||| ||||    
4852622 ggtcgatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----ttccatgtagttgctactagtttatga 4852716  T

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Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 4841141 - 4841282
Alignment:
16 gagtgaaggatttaattcgggttttatctaagtcattgaccaaaattacatcttggtacacttttaaggagaaaaatggttgtttttccaataatgtttt 115  Q
    ||||||||||||||||| | |||||||  ||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
4841141 gagtgaaggatttaattggcgttttattcaagtcgtggaccaaaattaaatcttgttacacttttaaggagaaaaatggttgtttttccaataatgtttt 4841240  T
116 ctaatattaaattaatgttgttttctgcattagggatgttac 157  Q
    | ||||||||||||  |||||||| ||| |||||||||||||    
4841241 ccaatattaaattacagttgttttatgccttagggatgttac 4841282  T

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Target: chr3; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 4826448 - 4826570
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcatagag--ttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||  |||||||||||||||  |||||||||||||||||||||||||||    
4826448 ttagccactttaagaagtgatattattattagtgttggtgcataatacatagagagttaactggttttata--ctagttagagactcaatgtgagtttat 4826545  T
363 ggtcaatctaagtcatgtactaaat 387  Q
    |||||||||||||||| ||||||||    
4826546 ggtcaatctaagtcatttactaaat 4826570  T

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Target: chr3; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 4834409 - 4834553
Alignment:
16 gagtgaaggatttaattcgggttttatctaagtcattgaccaaaattacatcttggtacacttttaaggagaaaaatggttgtttttccaataatgtttt 115  Q
    ||||||||||||||||| | |||||||  ||||| | ||||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||    
4834409 gagtgaaggatttaattggcgttttattcaagtcgtggaccaaaattaaatcatgttacacttctaaggagaaaaatggttgtttttccaataatgtttt 4834508  T
116 ctaatattaaattaatgttgttttctgcattagggatgttaccaa 160  Q
    | ||||||||||||| |||  ||| ||| ||||||||||||||||    
4834509 ccaatattaaattaaagtttatttatgccttagggatgttaccaa 4834553  T

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Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 4842873 - 4842987
Alignment:
355 gagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactag 454  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |     |||||||||||||||||||    
4842873 gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag 4842968  T
455 ttgatgatcagtacctatc 473  Q
    |||||||||| || |||||    
4842969 ttgatgatcactaactatc 4842987  T

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Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 4868569 - 4868683
Alignment:
355 gagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactag 454  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||| |     |||||||||||||||||||    
4868569 gagtttatggtcaatctaagtcatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag 4868664  T
455 ttgatgatcagtacctatc 473  Q
    |||||||||| || |||||    
4868665 ttgatgatcactaactatc 4868683  T

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Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 4871576 - 4871688
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||| ||||  ||||||||||| ||||||  |||||||||||||||||||||||||||    
4871576 ttagccattttaagaagtgatattattatt-gtgttggtgcataatacatatggagttaactggctttata--ctagttagagactcaatgtgagtttat 4871672  T
363 ggtcaatctaagtcat 378  Q
    ||||||||||||||||    
4871673 ggtcaatctaagtcat 4871688  T

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Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 4845817 - 4845929
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcatag--agttaactggttttatatactagttagagactcaatgtgagtttat 362  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||| |||||  |||||||||| ||||||  ||||||||||||||||||||| ||| |    
4845817 ttagccattttaagaagtgatattattatt-gtgttggtgcataatacataggtagttaactggctttata--ctagttagagactcaatgtgatttttt 4845913  T
363 ggtcaatctaagtcat 378  Q
    ||||||||||||||||    
4845914 ggtcaatctaagtcat 4845929  T

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Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 464
Target Start/End: Original strand, 4860793 - 4860975
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagtt-aactggttttatatactagttagagactcaatgtgagttta 361  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| ||||  ||||| |||||||||  ||||||||||||||||||||||||||| ||    
4860793 ttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttt--tatactagttagagactcaatgtgagtcta 4860890  T
362 tggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatga 461  Q
    | |||||||              || || ||||||||| |||||||||||||||||||||| ||||| |    ||||||||||||| |||||| ||||||    
4860891 tcgtcaatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaag----ttccatgtatttgatactagctgatga 4860972  T

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Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 464
Target Start/End: Original strand, 4880800 - 4880982
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcata--gagtt-aactggttttatatactagttagagactcaatgtgagttta 361  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| ||||  ||||| |||||||||  ||||||||||||||||||||||||||| ||    
4880800 ttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttt--tatactagttagagactcaatgtgagtcta 4880897  T
362 tggtcaatctaagtcatgtactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatga 461  Q
    | |||||||              || || ||||||||| |||||||||||||||||||||| ||||| |    ||||||||||||| |||||| ||||||    
4880898 tcgtcaatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaag----ttccatgtatttgatactagctgatga 4880979  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 4826595 - 4826631
Alignment:
437 ccatgtatttgctactagttgatgatcagtacctatc 473  Q
    |||||||||||||||| ||||||||||||||||||||    
4826595 ccatgtatttgctacttgttgatgatcagtacctatc 4826631  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 4837426 - 4837466
Alignment:
347 ctcaatgtgagtttatggtcaatctaagtcatgtactaaat 387  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
4837426 ctcaatgtgagtttatggtcaatataagtcatttactaaat 4837466  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 462
Target Start/End: Original strand, 4846018 - 4846083
Alignment:
393 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgat 462  Q
    |||||| || ||||||||||||| |||||| |||||||    |||||||||||||| |||||||||||||    
4846018 aattgtttatgaattgaattattgaacaatgttacatg----ttccatgtatttgcaactagttgatgat 4846083  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 21703842 - 21703749
Alignment:
265 ttagccattttaagaagtgattttataattagtgttggtgcataatgcatag--agttaactggttttatatactagttagagactcaatgtgagt 358  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||  |||||  ||||||| |||||  |||||||||||||||||||||| ||||    
21703842 ttagccattttaagaagtgatattaatattagtgttggtgcataagacataggaagttaaccggttt--tatactagttagagactcaatgggagt 21703749  T

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