View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3766_low_1 (Length: 728)

Name: NF3766_low_1
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3766_low_1
NF3766_low_1
[»] chr1 (24 HSPs)
chr1 (8-715)||(5831303-5832010)
chr1 (318-527)||(25238436-25238644)
chr1 (278-580)||(34490094-34490396)
chr1 (270-481)||(29676979-29677189)
chr1 (315-507)||(29167749-29167939)
chr1 (332-509)||(42604195-42604372)
chr1 (285-550)||(34364169-34364431)
chr1 (300-452)||(38951941-38952093)
chr1 (469-559)||(5855201-5855291)
chr1 (269-360)||(13351011-13351102)
chr1 (397-550)||(517433-517585)
chr1 (292-434)||(2569960-2570101)
chr1 (470-566)||(13350903-13350999)
chr1 (473-576)||(34490289-34490393)
chr1 (470-568)||(29676999-29677096)
chr1 (397-473)||(2996025-2996101)
chr1 (473-568)||(5831633-5831728)
chr1 (270-360)||(5855230-5855320)
chr1 (273-334)||(34941701-34941762)
chr1 (277-349)||(13350888-13350960)
chr1 (470-550)||(38952005-38952085)
chr1 (511-568)||(13351024-13351081)
chr1 (473-538)||(29167754-29167818)
chr1 (292-349)||(29677206-29677263)
[»] chr2 (20 HSPs)
chr2 (271-589)||(30905945-30906264)
chr2 (270-510)||(1400667-1400906)
chr2 (376-587)||(43900426-43900638)
chr2 (268-499)||(28527215-28527444)
chr2 (285-482)||(33667320-33667516)
chr2 (292-559)||(45305894-45306159)
chr2 (470-566)||(1400689-1400785)
chr2 (286-360)||(30906172-30906246)
chr2 (470-559)||(33667413-33667502)
chr2 (492-587)||(34175042-34175138)
chr2 (271-346)||(34175248-34175323)
chr2 (285-360)||(41212432-41212507)
chr2 (470-559)||(28527245-28527334)
chr2 (472-576)||(30905955-30906060)
chr2 (286-362)||(45305881-45305957)
chr2 (492-555)||(41212426-41212489)
chr2 (406-568)||(7378498-7378658)
chr2 (285-347)||(34175057-34175119)
chr2 (285-362)||(7378586-7378663)
chr2 (470-527)||(43900626-43900683)
[»] chr6 (27 HSPs)
chr6 (274-587)||(22608259-22608575)
chr6 (303-531)||(10304627-10304854)
chr6 (323-525)||(33814961-33815164)
chr6 (294-585)||(3222332-3222624)
chr6 (292-481)||(9068411-9068599)
chr6 (322-481)||(138661-138819)
chr6 (322-481)||(146682-146840)
chr6 (375-589)||(23595050-23595255)
chr6 (470-566)||(9068503-9068599)
chr6 (270-360)||(30056019-30056109)
chr6 (278-434)||(2430508-2430664)
chr6 (270-454)||(2834994-2835178)
chr6 (292-360)||(7915719-7915787)
chr6 (378-477)||(3620761-3620860)
chr6 (284-349)||(7915609-7915675)
chr6 (284-362)||(23595066-23595144)
chr6 (285-360)||(20084589-20084664)
chr6 (285-360)||(24386337-24386412)
chr6 (286-360)||(7706773-7706847)
chr6 (292-358)||(22608281-22608347)
chr6 (501-587)||(7915595-7915683)
chr6 (397-470)||(9474646-9474718)
chr6 (470-536)||(2430553-2430618)
chr6 (318-360)||(11108111-11108153)
chr6 (470-543)||(138653-138726)
chr6 (470-543)||(146674-146747)
chr6 (294-351)||(13767125-13767182)
[»] chr8 (27 HSPs)
chr8 (273-587)||(38606724-38607039)
chr8 (370-587)||(1251470-1251687)
chr8 (278-559)||(5573707-5573988)
chr8 (370-559)||(5321955-5322144)
chr8 (370-587)||(31596693-31596911)
chr8 (322-507)||(26493282-26493466)
chr8 (284-527)||(15714602-15714845)
chr8 (370-481)||(1240894-1241004)
chr8 (398-566)||(29367076-29367243)
chr8 (267-429)||(24575798-24575959)
chr8 (470-568)||(15714608-15714706)
chr8 (396-473)||(15233241-15233318)
chr8 (440-587)||(33286115-33286263)
chr8 (288-351)||(15233134-15233197)
chr8 (393-587)||(31273578-31273773)
chr8 (472-555)||(38606754-38606837)
chr8 (415-588)||(32959457-32959631)
chr8 (285-362)||(28700053-28700129)
chr8 (284-360)||(24576181-24576257)
chr8 (470-542)||(26914631-26914702)
chr8 (470-536)||(5321907-5321973)
chr8 (295-357)||(5322086-5322148)
chr8 (372-432)||(24537977-24538037)
chr8 (292-360)||(31596715-31596783)
chr8 (296-358)||(5573704-5573766)
chr8 (493-550)||(15233338-15233395)
chr8 (323-356)||(31273687-31273720)
[»] chr7 (26 HSPs)
chr7 (284-590)||(31303348-31303654)
chr7 (265-477)||(21589632-21589844)
chr7 (278-519)||(5083694-5083933)
chr7 (315-588)||(21548350-21548623)
chr7 (272-477)||(28804882-28805089)
chr7 (320-568)||(4290745-4290992)
chr7 (292-587)||(18312725-18313020)
chr7 (270-527)||(20556725-20556985)
chr7 (320-548)||(15958256-15958485)
chr7 (492-587)||(28805138-28805234)
chr7 (284-360)||(28805144-28805220)
chr7 (469-568)||(32964848-32964947)
chr7 (376-442)||(5174910-5174976)
chr7 (292-360)||(22740076-22740144)
chr7 (292-400)||(22033147-22033253)
chr7 (376-454)||(22740658-22740736)
chr7 (288-360)||(5083912-5083984)
chr7 (284-360)||(18312739-18312815)
chr7 (470-566)||(21589721-21589817)
chr7 (284-360)||(31303365-31303441)
chr7 (284-360)||(32964877-32964953)
chr7 (470-550)||(20556867-20556947)
chr7 (470-550)||(22033158-22033238)
chr7 (470-549)||(21548550-21548629)
chr7 (396-460)||(46943761-46943827)
chr7 (323-385)||(20556717-20556779)
[»] chr4 (32 HSPs)
chr4 (270-519)||(1966728-1966975)
chr4 (264-559)||(17633229-17633523)
chr4 (318-589)||(8740730-8741004)
chr4 (370-587)||(9808972-9809190)
chr4 (370-585)||(16583496-16583712)
chr4 (398-587)||(9810658-9810848)
chr4 (373-531)||(33179755-33179913)
chr4 (278-486)||(14351062-14351270)
chr4 (373-487)||(33249612-33249726)
chr4 (273-585)||(19596680-19596996)
chr4 (390-536)||(35544433-35544578)
chr4 (318-462)||(42908592-42908735)
chr4 (395-527)||(55666844-55666974)
chr4 (296-454)||(24669216-24669363)
chr4 (292-360)||(17633462-17633530)
chr4 (284-360)||(19746943-19747019)
chr4 (284-360)||(19792787-19792863)
chr4 (470-568)||(17633255-17633352)
chr4 (469-559)||(24669270-24669360)
chr4 (473-558)||(1966758-1966841)
chr4 (395-505)||(2433693-2433802)
chr4 (284-350)||(19596692-19596758)
chr4 (292-358)||(25007625-25007690)
chr4 (492-550)||(42908687-42908745)
chr4 (285-349)||(9810673-9810737)
chr4 (284-360)||(16583508-16583584)
chr4 (470-550)||(16583694-16583773)
chr4 (535-589)||(23048934-23048989)
chr4 (318-360)||(8740638-8740680)
chr4 (284-362)||(8740910-8740988)
chr4 (494-587)||(19746939-19747033)
chr4 (494-587)||(19792773-19792867)
[»] chr3 (44 HSPs)
chr3 (278-587)||(19280098-19280405)
chr3 (300-566)||(1705593-1705857)
chr3 (273-527)||(42637855-42638106)
chr3 (270-587)||(3823549-3823867)
chr3 (270-587)||(3785860-3786175)
chr3 (284-480)||(26308547-26308743)
chr3 (272-527)||(5341835-5342090)
chr3 (273-479)||(31545623-31545829)
chr3 (320-550)||(44080192-44080422)
chr3 (377-486)||(4169105-4169214)
chr3 (381-587)||(9710728-9710929)
chr3 (292-487)||(22432329-22432524)
chr3 (370-474)||(19624317-19624421)
chr3 (322-463)||(27707696-27707837)
chr3 (395-486)||(13358110-13358200)
chr3 (431-584)||(11509804-11509958)
chr3 (372-462)||(27079291-27079381)
chr3 (372-462)||(27085088-27085178)
chr3 (284-349)||(18733611-18733676)
chr3 (469-568)||(27335307-27335406)
chr3 (273-461)||(34627195-34627383)
chr3 (396-473)||(27335402-27335479)
chr3 (291-462)||(39126188-39126360)
chr3 (284-360)||(3823563-3823639)
chr3 (470-566)||(22432428-22432524)
chr3 (492-566)||(19280317-19280391)
chr3 (288-357)||(33488210-33488280)
chr3 (292-349)||(9710850-9710907)
chr3 (273-330)||(27364903-27364960)
chr3 (377-486)||(42481300-42481409)
chr3 (284-360)||(3785874-3785950)
chr3 (493-568)||(18733595-18733670)
chr3 (292-447)||(11501309-11501464)
chr3 (290-360)||(27335307-27335377)
chr3 (473-558)||(1705593-1705678)
chr3 (386-423)||(55165108-55165145)
chr3 (297-349)||(26308772-26308824)
chr3 (285-349)||(27707587-27707651)
chr3 (271-349)||(33488373-33488451)
chr3 (470-540)||(39126263-39126333)
chr3 (396-473)||(27326047-27326124)
chr3 (396-473)||(27332284-27332361)
chr3 (396-461)||(27365008-27365073)
chr3 (469-542)||(33488333-33488406)
[»] scaffold1126 (3 HSPs)
scaffold1126 (320-550)||(152-382)
scaffold1126 (286-356)||(334-404)
scaffold1126 (473-576)||(112-217)
[»] chr5 (30 HSPs)
chr5 (292-581)||(22169361-22169650)
chr5 (292-487)||(35922731-35922926)
chr5 (318-586)||(13312498-13312766)
chr5 (278-471)||(42034771-42034964)
chr5 (273-422)||(15221628-15221777)
chr5 (370-587)||(38521961-38522176)
chr5 (381-559)||(19621477-19621654)
chr5 (318-527)||(33958921-33959129)
chr5 (370-481)||(43461694-43461805)
chr5 (370-587)||(31189474-31189693)
chr5 (470-559)||(22169555-22169643)
chr5 (292-360)||(35922628-35922696)
chr5 (284-360)||(43262821-43262897)
chr5 (470-552)||(13312696-13312778)
chr5 (396-462)||(30704398-30704464)
chr5 (399-461)||(43262708-43262770)
chr5 (487-586)||(35922607-35922707)
chr5 (297-360)||(19621593-19621656)
chr5 (470-568)||(15221662-15221760)
chr5 (438-519)||(36169394-36169475)
chr5 (370-449)||(30045885-30045964)
chr5 (288-357)||(13312515-13312584)
chr5 (370-438)||(2477302-2477370)
chr5 (278-346)||(16095519-16095587)
chr5 (470-576)||(35922830-35922936)
chr5 (492-550)||(36169337-36169395)
chr5 (278-385)||(43461797-43461903)
chr5 (396-473)||(7156105-7156182)
chr5 (284-357)||(22169369-22169442)
chr5 (318-351)||(30704331-30704364)
[»] scaffold0123 (1 HSPs)
scaffold0123 (374-487)||(24018-24130)
[»] scaffold0251 (1 HSPs)
scaffold0251 (393-487)||(10631-10725)
[»] scaffold0024 (1 HSPs)
scaffold0024 (396-473)||(112158-112235)
[»] scaffold0126 (1 HSPs)
scaffold0126 (279-404)||(21420-21545)
[»] scaffold0043 (2 HSPs)
scaffold0043 (396-461)||(87047-87112)
scaffold0043 (292-399)||(86895-87002)
[»] scaffold0016 (1 HSPs)
scaffold0016 (271-349)||(49407-49484)


Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 715
Target Start/End: Complemental strand, 5832010 - 5831303
Alignment:
Q  8 aaattattctaacttcgcttgtgaatataataatattggagtttatcaatttatgtacatatcaaattcaatagtatttttcggacgaactctaattaat 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5832010 aaattactctaacttcgcttgtgaatataataatattggagtttatcaatttatgtacatatcaaatttaatagtatttttcggacgaactctaattaat 5831911  T
Q  108 aggatttttatctcctaagaaccggtgggttaaaacaaaattgctctattgagaatgagaaaaacccaaaacctaatatgaaggtgaggtaatcaagggt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  5831910 aggatttttatctcctaagaaccggtgggttaaaacaaaattgctctattaaaaatgagaaaaacccaaaacctaatatgaaggtgaggtaatcaagggt 5831811  T
Q  208 ggtgtactcaacttataatgagatcaattgggcaattatggttggcttcttcgatacataatgagcaataataggaagacacctttaatgtgtacacccc 307  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||    
T  5831810 ggtgtactcaacttagaatgagatcaattgggaaattatggttggcttcttcgatacataatgagcaatgacagggagacacctttaacgtgtacacccc 5831711  T
Q  308 tttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgatt 407  Q
    ||| ||||| |||||||||||||| |||| |||||||||||||| ||||||||||       ||||| |||||||||| |||||||||||||||||| ||    
T  5831710 tttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccactaattttccagaatttatttggtt 5831611  T
Q  408 aactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacaca 507  Q
    |||||||||||||||| |||||||  |||||||||||| || |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5831610 aactaagtggaaaaattgtggtaatacgcattttagttacgggaccatattttttaacttctaaatagtggtcatgcaacaaacaaaatatgatcacaca 5831511  T
Q  508 tatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaagtgtctaccaatctttattcatgcataatgggccaatgaa 607  Q
    || ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5831510 taccatatctttagttaactaaaatttttcagaatgttacaaaagggtgtactcattaaagtgtctaccaatctttattcatacataatgggccaatgaa 5831411  T
Q  608 aatcaattacctatatcaatgaaccatgcatgcgtgaataagataagaagtcttaggatgacataagaagagtgtatgtattttggacaaggaacacgat 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5831410 aatcaattacctatatcaatgaaccatgcatgcgtgaataagataagaagtcttaggatgacataagaagagtgtatgtattttggacaaggaacacgat 5831311  T
Q  708 gaaggaat 715  Q
    ||||||||    
T  5831310 gaaggaat 5831303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 318 - 527
Target Start/End: Complemental strand, 25238644 - 25238436
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtgg 417  Q
    |||||||||||||||||||||||||||||||| | |||||||| |       |||| |||||| ||||||||| ||||||||||||| ||||||||||||    
T  25238644 tctgaaaaatttcagttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactactagtttttcagaatttatttggttaactaagtgg 25238545  T
Q  418 aaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatat 517  Q
    |||||| ||||| |||| ||||||| || ||||||||| ||||||| ||||||||||||||||| |||||  | ||||| |||||| | | | |||||||    
T  25238544 aaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagtggtcacgcaactgaaaaaatttgatcatatagaccatatat 25238446  T
Q  518 ttagttaact 527  Q
    ||||||||||    
T  25238445 ttagttaact 25238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 278 - 580
Target Start/End: Complemental strand, 34490396 - 34490094
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||||  |||||||||||||| |||| || || ||||||||||||||||| |  ||||||||||||| |||||||| |       ||||| ||    
T  34490396 ataggtagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgt 34490297  T
Q  378 gaccactagttttc-cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagt 476  Q
    |||||||||||||  ||||||||||||| |||||||| | ||||||| ||||| | |||||||||| |||| ||||||| ||||||| ||||||||||||    
T  34490296 gaccactagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattttttagcttctaaatagt 34490198  T
Q  477 ggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctac 575  Q
    |||||| ||||  | |||||||| ||||||| | ||||||||||||||||| ||| ||| || |||| ||| ||| | | ||| ||||||  ||||||||    
T  34490197 ggtcatacaactgaaaaaatgtg-tcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctac 34490099  T
Q  576 caatc 580  Q
    |||||    
T  34490098 caatc 34490094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 270 - 481
Target Start/End: Original strand, 29676979 - 29677189
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||  |||||||||||||||||||  |||||| || || | |||||||||| |||||| ||||||||||| || |||||||| |           
T  29676979 gagcaatgatagttagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccacatttttt- 29677077  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    |||||  ||||||||| |||| ||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| | |||||    
T  29677078 agttgcatgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttct 29677177  T
Q  470 aaatagtggtca 481  Q
    ||||||||||||    
T  29677178 aaatagtggtca 29677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 315 - 507
Target Start/End: Original strand, 29167749 - 29167939
Alignment:
Q  315 cattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaag 414  Q
    |||| |||||||||||||||||  ||||||||||| | |||||||| |       |||||  |||||||||||||| | ||||||||||| |||||||||    
T  29167749 cattttgaaaaatttcagttaactaaatatatggtttgtgtgaccacatttttt-agttgcctgaccactagtttttcggaatttatttggttaactaag 29167847  T
Q  415 tggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacaca 507  Q
    ||||||||| ||||| | |||||||||| |||||||||||  ||||||| ||||||||||||||||| |||||  | |||||||||| |||||    
T  29167848 tggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattttttagcttctaaatagtggtcacgcaactgaaaaaatgtgattacaca 29167939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 509
Target Start/End: Complemental strand, 42604372 - 42604195
Alignment:
Q  332 gttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaa 431  Q
    |||||||||||||||||| | |||||||| |       |||||||||| ||||| |||| ||||||||||||  |||||||||||||||||| ||||| |    
T  42604372 gttaatcaaatatatggtttgtgtgaccacattgttttagttgtgtgatcactattttttcagaatttatttcgttaactaagtggaaaaatagtggtca 42604273  T
Q  432 cgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacata 509  Q
    |||||||||||||||  ||||||   |||| | ||||||||||||||| |||||||  | |||||||| |||||||||    
T  42604272 cgcgcattttagttgtatgaccatacttttaagcttctaaatagtggtgatgcaactgaaaaaatgtggtcacacata 42604195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 285 - 550
Target Start/End: Complemental strand, 34364431 - 34364169
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccact 384  Q
    ||||| ||||| ||||||| |||||| ||  | |||||||||||| ||||||||||||||||| ||| ||| | || |       ||||||||||||| |    
T  34364431 gacacatttaacgtgtacatccctttgtactactctgaaaaatttaagttaatcaaatatatgctctgtgtaatcacattcttt-agttgtgtgaccatt 34364333  T
Q  385 agttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgc 484  Q
    | ||||||||||||| |||| ||||||||||| |||||| ||||| |||  ||||||||||| |||||||| | ||| | |||||||||| ||| || ||    
T  34364332 atttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttctaaata-tggccacgc 34364234  T
Q  485 aacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    |||  | ||||| || ||||||| | ||||||||||||||||| ||| ||| ||||||| ||||||    
T  34364233 aactga-aaaatatggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaa 34364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 300 - 452
Target Start/End: Complemental strand, 38952093 - 38951941
Alignment:
Q  300 tacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaattt 399  Q
    |||||| |||| ||||| |||||||||||||||||||  |||| |||||| ||||||||||||       |||||  ||||||||| || |||| |||||    
T  38952093 tacacctctttgtatcactctgaaaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgaccactatttctccaaaattt 38951994  T
Q  400 atttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgac 452  Q
    ||||| |||||||||| ||||||| ||||| |  |||||||||||||||||||    
T  38951993 atttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgac 38951941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 469 - 559
Target Start/End: Original strand, 5855201 - 5855291
Alignment:
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||||||||||| ||||| ||| ||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||| ||||||    
T  5855201 taaatagtggtcacgcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtac 5855291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 13351102 - 13351011
Alignment:
Q  269 tgagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||| ||||  ||||| ||||||||||||||||||||| || || |||||||||||| | |||| |||||||||||||| ||||||||    
T  13351102 tgagcaatgatagctagacatctttaatgtgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtctttgtgacca 13351011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 397 - 550
Target Start/End: Original strand, 517433 - 517585
Alignment:
Q  397 tttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaat 496  Q
    |||||||| ||||||||||  |||||| || || | |  |||||||||||||||| ||  ||||||||||||||||||||||| | ||||   | |||||    
T  517433 tttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgcaattga-aaaat 517531  T
Q  497 gtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    ||| |  |||||||||||||||| ||||||| ||| |||| |||||| ||||||    
T  517532 gtggttgcacatatcatatatttggttaacttaaatttttgagagtgatacaaa 517585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 292 - 434
Target Start/End: Complemental strand, 2570101 - 2569960
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||||| ||| || |  |||| ||||||| |||||| ||| |||||||| | ||| ||||||       ||||| |||||||||| |||||    
T  2570101 ttaatgtgtacaccc-tttgtaccgctctggaaaatttaagttaaccaagtatatggtttgtgttaccatattttttgagttgcgtgaccactatttttc 2570003  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgc 434  Q
     |||||||||||| |||||||||||||||||| ||||| ||||    
T  2570002 tagaatttatttggttaactaagtggaaaaatagtggtcacgc 2569960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 470 - 566
Target Start/End: Complemental strand, 13350999 - 13350903
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    ||||||| | ||||||||  | |||| ||||||||||||| ||||||||| ||||||| ||| |||  |||||| ||||||||||||||| ||||||    
T  13350999 aaatagtagccatgcaactgaaaaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaa 13350903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 576
Target Start/End: Original strand, 34490289 - 34490393
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgt 571  Q
    ||||||||| ||||| || |||||||| ||||||| | ||||||||| || |||| ||| ||||||||||| ||||||  ||||||| |||||| |||||    
T  34490289 tagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgt 34490388  T
Q  572 ctacc 576  Q
    |||||    
T  34490389 ctacc 34490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 568
Target Start/End: Complemental strand, 29677096 - 29676999
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    |||||||||||||||||| || |||||||| |||||||   ||||||||| ||||||||||| |||||| |||| |||||| ||  |||| ||||||||    
T  29677096 aaatagtggtcatgcaactaa-aaaatgtggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaag 29676999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 2996101 - 2996025
Alignment:
Q  397 tttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    |||||||| ||||||||| |||||||| | ||  |||||||||||| |||||||||||| ||||| | |||||||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttcagcttctaaat 2996025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 568
Target Start/End: Original strand, 5831633 - 5831728
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    ||||||||| ||||| || ||||| || ||||||| | ||||||||| ||||| | ||| ||||||||||| |||||| |||||||| | ||||||    
T  5831633 tagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaag 5831728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 5855320 - 5855230
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| ||||| |||||||  |||| ||||||| | ||| || || |||||||||||| |||||| |||||||||||| | ||||||||    
T  5855320 gagcaatgataggtagacaccactaatatgtacactcttttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgacca 5855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 34941701 - 34941762
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagtt 334  Q
    |||| ||||||||||| | |||||||||||| |||||| || || |||||||||||||||||    
T  34941701 caatgataggaagacatccttaatgtgtacatccctttgtaccactctgaaaaatttcagtt 34941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 13350888 - 13350960
Alignment:
Q  277 aataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||| ||||| | ||||||||||||||| ||| || || |||  |||||||||||||| ||||||||||||    
T  13350888 aataggtagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggt 13350960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 38952005 - 38952085
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    |||||||||||| ||||| || ||||| || ||||| ||| |||| |||| ||||||| ||| ||||||||||| ||||||    
T  38952005 aaatagtggtcaagcaactaaaaaaatatggtcacatataccatacattttgttaactgaaatttttcagagtgatacaaa 38952085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 568
Target Start/End: Original strand, 13351024 - 13351081
Alignment:
Q  511 catatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    ||||||||| ||||| | ||| ||||||||||| |||||| |||||||| ||||||||    
T  13351024 catatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaag 13351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 29167818 - 29167754
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttca 538  Q
    ||||||||| ||||| || |||||||| ||||||| | ||||||||||||||||| ||| ||||||    
T  29167818 tagtggtcaggcaactaa-aaaatgtggtcacacaaaccatatatttagttaactgaaatttttca 29167754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 29677263 - 29677206
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||||||||||| |||| || || ||| |||||||| |||||| ||||||||||||    
T  29677263 ttaatgtgtacacctctttgtaccactctcaaaaatttaagttaaacaaatatatggt 29677206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 271 - 589
Target Start/End: Original strand, 30905945 - 30906264
Alignment:
Q  271 agcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnna 370  Q
    |||||| ||||| ||||||  |||||||||||| |||||| || ||||||||||| ||| |||||| || |||||| |||| |||||||| |       |    
T  30905945 agcaatgataggtagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccacatttattta 30906044  T
Q  371 gttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttcta 470  Q
    |||||||||||||||  |||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | | | ||    
T  30906045 gttgtgtgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcattta 30906144  T
Q  471 aatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gt 569  Q
    ||||||||||| | |||  | |||  ||| |||| || | ||||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||    
T  30906145 aatagtggtcacgaaactgaaaaatggtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggt 30906244  T
Q  570 gtctaccaatctttattcat 589  Q
    || |||| ||||||||||||    
T  30906245 gtgtacccatctttattcat 30906264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 270 - 510
Target Start/End: Original strand, 1400667 - 1400906
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||||||||| ||||||| ||||||||||||||| ||| || || ||||||||||||||||||| |||||||||||| | |||||||| |           
T  1400667 gagcaataataggtagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacatttttta 1400766  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| |||||||||| ||||||| |||||||||| |||||||||||||||||| ||| | ||||||||||| |||| |||||||| ||||| | |||||    
T  1400767 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagcttct 1400866  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatat 510  Q
    |||||||||||| |||||  | |||||||| ||||||||||    
T  1400867 aaatagtggtcacgcaactga-aaaatgtggtcacacatat 1400906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 376 - 587
Target Start/End: Complemental strand, 43900638 - 43900426
Alignment:
Q  376 gtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatag 475  Q
    |||||| ||| |||| ||||||||||||| |||||||| | ||||||| ||||| ||| ||||||||||||||||||||| ||||| | |||||||||||    
T  43900638 gtgacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatag 43900539  T
Q  476 tggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtcta 574  Q
    ||||||  ||||  | |||||||||||||||| | |||||||||||||| || ||| |||  |||||| ||||||| | | ||| |||| ||||||||||    
T  43900538 tggtcacacaactgaaaaaatgtgatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtcta 43900439  T
Q  575 ccaatctttattc 587  Q
     ||||||||||||    
T  43900438 tcaatctttattc 43900426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 268 - 499
Target Start/End: Original strand, 28527215 - 28527444
Alignment:
Q  268 atgagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnn 367  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||| || || | ||||||||||||| ||| |||||||||||||| |||||||| |         
T  28527215 atgagcaatgataggtagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccacattttt 28527313  T
Q  368 nnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaactt 467  Q
      ||||| |||||||||| |||||||||||||||||| |||||||| ||||||||| ||||| || ||||| |||||| |||||| || ||||  | |||    
T  28527314 ttagttgcgtgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattttccagctt 28527412  T
Q  468 ctaaatagtggtcatgcaacaaacaaaatgtg 499  Q
    ||||||  |||||| ||||| || ||||||||    
T  28527413 ctaaattatggtcacgcaactaaaaaaatgtg 28527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 482
Target Start/End: Complemental strand, 33667516 - 33667320
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccact 384  Q
    |||||| ||||| ||||||| | ||| || || |||||||||||| |||||| |||||||||||| | | ||| || |       ||||| |||||||||    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccact 33667417  T
Q  385 agttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcat 482  Q
    | |||| |||||| |||||| |||||||||||||||||| ||||| |||| ||||||| |||||||||||| ||||| ||||||||||| ||||||||    
T  33667416 attttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaat-gtggtcat 33667320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 292 - 559
Target Start/End: Complemental strand, 45306159 - 45305894
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||| | ||| ||||||||| |||||||| ||| ||||||||||||| | | |||||||| |       |||| ||||| || || ||||     
T  45306159 ttaatgtgtacactcatttatatcattctaaaaaatttaagt-aatcaaatatatgatatgtgtgaccacatttttttagttatgtgatcaatatttttt 45306061  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaac 491  Q
     |||||||||| | |||||||||||||||||| ||||| |||| ||||||||||||||| |||| ||||| | ||| ||||| ||||||| |||||  |     
T  45306060 tagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaat-gtggtcacgcaactgaa 45305962  T
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||| || ||| ||| |  ||||||||  |||||| ||| |||| |||||| |||||| | ||||||    
T  45305961 aaaatatggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtac 45305894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 566
Target Start/End: Complemental strand, 1400785 - 1400689
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||||||| |||||  | |||||||| ||||||||| ||||||||| ||||||| ||| |||||||| || ||||||||||||||| ||||||    
T  1400785 aaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaa 1400689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 30906246 - 30906172
Alignment:
Q  286 acacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||||||||||||||||| ||| || || ||||||||||||||||||| ||||||||||||||  |||||||    
T  30906246 acacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgacca 30906172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 470 - 559
Target Start/End: Original strand, 33667413 - 33667502
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    |||||||||||| |||||  | |||||||| ||| ||||| ||||||||| ||||||||||| ||||||||||| |||||||| ||||||    
T  33667413 aaatagtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagagtgtac 33667502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 34175138 - 34175042
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 587  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||| |  |||||| || ||||| |||| |||||||| ||| ||||||||||    
T  34175138 aaaatgtaatcacacaaatcatatatttagttaattgaaaattttcagaataatacaaagggatgtacacattaaaagtgtcaacctatctttattc 34175042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 34175323 - 34175248
Alignment:
Q  271 agcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatat 346  Q
    |||||| |||||  |||||| ||||||||||||||| ||| || |||||| |||||||| ||||||||||||||||    
T  34175323 agcaatgataggttgacaccattaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatat 34175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 41212507 - 41212432
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||| ||||| |||| |||||||| || || |||||||||||| |||||| |||||||||||||| ||||||||    
T  41212507 gacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgacca 41212432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 559
Target Start/End: Complemental strand, 28527334 - 28527245
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    |||||||||||| ||||| || |||||||| ||||||| | ||||||||| |||| || ||| |||||| |||| |||||| ||||||||    
T  28527334 aaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtac 28527245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 576
Target Start/End: Complemental strand, 30906060 - 30905955
Alignment:
Q  472 atagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtg 570  Q
    ||||||||||  |||| ||  ||||||| ||||||| |  |||||| | |||||||||||||||||||| ||||||||| || ||||| |||||| ||||    
T  30906060 atagtggtcacacaactaaataaatgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtg 30905961  T
Q  571 tctacc 576  Q
    ||||||    
T  30905960 tctacc 30905955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 45305881 - 45305957
Alignment:
Q  286 acacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccata 362  Q
    ||||| ||||| ||||||| ||||| || || ||| ||||||||||||||||||||||||| |||| | ||||||||    
T  45305881 acacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccata 45305957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 41212426 - 41212489
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggt 555  Q
    |||||||| ||||||| | ||||||||| ||||||| ||| ||||||||||| |||||| ||||    
T  41212426 aaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggt 41212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 568
Target Start/End: Original strand, 7378498 - 7378658
Alignment:
Q  406 ttaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcaca 505  Q
    |||| ||||||||| ||| ||||| || | |||||||||||||| ||||   |||||| ||||||||| ||||| | |||||  | ||||| || |||||    
T  7378498 ttaattaagtggaataatagtggtcacacacattttagttgcgtcacca-tatttttagcttctaaat-gtggttacgcaactgaaaaaatatggtcaca 7378595  T
Q  506 catatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    || | ||||||||| ||||||| ||| ||||| || || | ||||||| || || ||||||||    
T  7378596 caaaccatatattttgttaactgaaatttttctgaatggtgcaaaaggatggacgcattaaag 7378658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 34175057 - 34175119
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatg 347  Q
    ||||| ||||||||||||| |||||| ||| |||||||||| ||||| ||||  |||||||||    
T  34175057 gacacttttaatgtgtacatccctttgtattattctgaaaattttcaattaactaaatatatg 34175119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 7378663 - 7378586
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccata 362  Q
    ||||||||||||| || || || |||  | ||||| ||||||||||||||||  ||||||||||| | ||||||||||    
T  7378663 gacacctttaatgcgtccatccttttgcaccattcagaaaaatttcagttaacaaaatatatggtttgtgtgaccata 7378586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 43900626 - 43900683
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaact 527  Q
    |||||| ||||| ||||  || |||||||||||||||| ||||||||||| |||||||    
T  43900626 aaataggggtcacgcaattaaaaaaatgtgatcacacaaatcatatatttggttaact 43900683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 274 - 587
Target Start/End: Complemental strand, 22608575 - 22608259
Alignment:
Q  274 aataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatat---atggtctatgtgaccatannnnnnna 370  Q
    ||||||||| |||||| |||||| ||||||||||||| ||||||| |||||| |||||||||| |||||||   ||| ||| ||||||||||       |    
T  22608575 aataataggtagacacttttaatatgtacacccctttgtatcattttgaaaattttcagttaaccaaatattatatgatctgtgtgaccatattgtttta 22608476  T
Q  371 gttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttcta 470  Q
    |||| |||||||||| |||| ||||| |||||||||||||||| |  |||||| ||||| | || |||||||||||| ||||||| ||||| | ||||||    
T  22608475 gttgcgtgaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttcta 22608376  T
Q  471 aatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-t 569  Q
    ||||||||||| |||||  | |||||||  ||||||| | ||||||||| ||||||||||| |||| |||||| |||||| |||||||| |||||| | |    
T  22608375 aatagtggtcacgcaactga-aaaatgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaaggat 22608277  T
Q  570 gtctaccaatctttattc 587  Q
     ||||||||| |||||||    
T  22608276 atctaccaatttttattc 22608259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 303 - 531
Target Start/End: Original strand, 10304627 - 10304854
Alignment:
Q  303 acccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatt 402  Q
    |||||||| || || ||| ||||||||||||||| |||||||||||||| |||||||| |       | ||| |||||||||  ||||||||||||||||    
T  10304627 acccctttgtaccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccacactttttaa-ttgcgtgaccactttttttccagaatttatt 10304725  T
Q  403 tgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatc 502  Q
    || ||||||||||| |||||| ||||| |||||||||||||||||||||||   |||||   ||||||||||||| ||| |||||  | |||||||| ||    
T  10304726 tggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagtgatcacgcaactgaaaaaatgtggtc 10304825  T
Q  503 acacatatcatatatttagttaactaaaa 531  Q
    ||||| | ||||||||||||| |||||||    
T  10304826 acacagaccatatatttagttcactaaaa 10304854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 323 - 525
Target Start/End: Original strand, 33814961 - 33815164
Alignment:
Q  323 aaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc-cagaatttatttgattaactaagtggaaaa 421  Q
    ||||||| ||||||||||||||||||| | | ||||||||       ||||| | |||||||  ||||  ||||||||||||| ||||||||||||||||    
T  33814961 aaaatttaagttaatcaaatatatggtttgtatgaccatatctgtttagttgcgcgaccactttttttttcagaatttatttggttaactaagtggaaaa 33815060  T
Q  422 atcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttag 521  Q
    || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||  | |||||||| ||||||| |  ||||||||||    
T  33815061 atggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaaatgtggtcacacagactatatatttag 33815160  T
Q  522 ttaa 525  Q
    ||||    
T  33815161 ttaa 33815164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 294 - 585
Target Start/End: Complemental strand, 3222624 - 3222332
Alignment:
Q  294 aatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactag-ttttcc 392  Q
    ||||||||||  | ||| ||||| ||| |||||  | ||||||||||||||||||||| |||||||| |       ||||  ||||||||||  ||||||    
T  3222624 aatgtgtacattcgtttgtatcactctaaaaaagattagttaatcaaatatatggtctgtgtgaccacatttttctagttacgtgaccactatattttcc 3222525  T
Q  393 agaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaaca 492  Q
    |||||||||||| |||||||||||||||||| ||||| |||  |||||||||||||||||| | ||||| | | | ||||||||||||| |||||  | |    
T  3222524 agaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatagtggtcacgcaactgaaa 3222425  T
Q  493 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttat 585  Q
    ||||||| ||||| | | ||||||||| ||||  | ||| |||| |||||  ||| ||||||||||| ||||||  ||||||| ||||||||||    
T  3222424 aaatgtggtcacagacaccatatatttggttatttgaaatttttaagagtaatac-aaagggtgtacacattaagggtgtctatcaatctttat 3222332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 292 - 481
Target Start/End: Complemental strand, 9068599 - 9068411
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||||| ||| || || |||||||||||| ||||||||||||||||||| | |||||||| |       ||||| |||||||||| |||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatttttc 9068500  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtca 481  Q
    ||||| ||||||| ||| |||||||||||||| ||  | ||||||||||||| || |||||||| ||||| | ||| |||||||||||||    
T  9068499 cagaacttatttgttta-ctaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacatttttcagcttttaaatagtggtca 9068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 322 - 481
Target Start/End: Original strand, 138661 - 138819
Alignment:
Q  322 aaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaa 421  Q
    |||||||| |||||| |||||||||||||| |||| ||| |       ||||| |||||||||| |||| ||||||||||||| || |||||||||||||    
T  138661 aaaaattt-agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaa 138759  T
Q  422 atcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtca 481  Q
    || |||||  ||| || ||||||||||||||||| ||||| | |||||||||||||||||    
T  138760 atagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtca 138819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 322 - 481
Target Start/End: Original strand, 146682 - 146840
Alignment:
Q  322 aaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaa 421  Q
    |||||||| |||||| |||||||||||||| |||| ||| |       ||||| |||||||||| |||| ||||||||||||| || |||||||||||||    
T  146682 aaaaattt-agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattttttcagaatttatttggttgactaagtggaaaa 146780  T
Q  422 atcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtca 481  Q
    || |||||  ||| || ||||||||||||||||| ||||| | |||||||||||||||||    
T  146781 atagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagtggtca 146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 589
Target Start/End: Complemental strand, 23595255 - 23595050
Alignment:
Q  375 tgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaata 474  Q
    ||||||||||| |||| ||||||||||||  |||||||||||||||||| ||||  |||||        |||  ||||||| ||||| | ||||||||||    
T  23595255 tgtgaccactaatttttcagaatttattttgttaactaagtggaaaaatagtggccacgcg--------ttg--tgaccacatttttcagcttctaaata 23595166  T
Q  475 gtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtct 573  Q
    || ||||  |||| || ||||| || ||||||| | ||||||||||||||||| ||| |||  |||||| ||||||||||||||| ||||||| ||||||    
T  23595165 gttgtcacacaactaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtct 23595066  T
Q  574 accaatctttattcat 589  Q
     |||||||||| ||||    
T  23595065 cccaatctttaatcat 23595050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 470 - 566
Target Start/End: Original strand, 9068503 - 9068599
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||||||| ||||| || |||||||| ||||||||| |||||||||  |||||||||| ||||||||||| ||||||||||||||| ||||||    
T  9068503 aaatagtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 30056019 - 30056109
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||||||||| ||||||||||||||| ||| ||||||| ||  | ||| ||||||||||||||| |||||||||||||||||||||||    
T  30056019 gagcaataataggtagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatatggtctatgtgacca 30056109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 278 - 434
Target Start/End: Original strand, 2430508 - 2430664
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaa-tttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtg 376  Q
    ||||| ||||||| ||||||||||||  ||||| || |||||||||||| ||||||||||  ||||||||| ||| |||||||||        |||||      
T  2430508 ataggtagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgaccat-tttttttagttgca 2430606  T
Q  377 tgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgc 434  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||| ||||| ||||    
T  2430607 tgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgc 2430664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 2835178 - 2834994
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||| ||||| | |||||||||| | |  ||| || || |||||||||||| |||||| ||||||||   ||| |||||||| |           
T  2835178 gagcaatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacattttttt 2835079  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgacca 454  Q
    |||||||| ||||||| ||||||| |||||||||  ||| ||||||||||||||  |||| ||||| ||||||||||| ||||||    
T  2835078 agttgtgtaaccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgacca 2834994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 7915787 - 7915719
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||||||||||| |||| ||||||||    
T  7915787 ttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgacca 7915719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 378 - 477
Target Start/End: Original strand, 3620761 - 3620860
Alignment:
Q  378 gaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtg 477  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||||| ||||| ||    |||||||||| |||| ||| ||||| |||||||||||||||    
T  3620761 gaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaatagtg 3620860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 7915609 - 7915675
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctg-aaaaatttcagttaatcaaatatatggt 349  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||||    
T  7915609 agacacctttaatgtgtacacccttttgtatcactctgaaaaaatttcagttaatcaaatatgtggt 7915675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 23595066 - 23595144
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccata 362  Q
    ||||||||||||||||||||||| ||| ||||| |||  ||||||| ||||||  ||||||||||||| ||||||||||    
T  23595066 agacacctttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccata 23595144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 20084589 - 20084664
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||| |||||||||||| |||||| || ||| ||||||||||| |||||| |||||||||||| | ||||||||    
T  20084589 gacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgacca 20084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 24386412 - 24386337
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||| |||||||||||| |||||| || ||  ||||||||||| |||||| |||||||||||||| ||||||||    
T  24386412 gacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgacca 24386337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 7706773 - 7706847
Alignment:
Q  286 acacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||||||||| || ||| || ||||||||||||||| |||||||  |||||||||| | ||||||||    
T  7706773 acacctttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgacca 7706847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 22608281 - 22608347
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgac 358  Q
    ||||||||||||||||||| || || ||| |||||||| |||||| |||||||||||||| ||||||    
T  22608281 ttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgac 22608347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 7915683 - 7915595
Alignment:
Q  501 tcacacatatcatatatttagttaactaaaaatttt-cagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattc 587  Q
    ||||||||| || ||||||  |||||| ||| |||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  7915683 tcacacataccacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctaccgatctttattc 7915595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 470
Target Start/End: Complemental strand, 9474718 - 9474646
Alignment:
Q  397 tttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttcta 470  Q
    |||||||| ||||||||||| |||||| ||||| || ||||||||| || ||||||||| ||||||| ||||||    
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattttttagcttcta 9474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 2430618 - 2430553
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaatttt 536  Q
    |||||||||||||||||| || ||||  || ||||||| ||||||||||||||||||| ||| ||||    
T  2430618 aaatagtggtcatgcaactaaaaaaaa-tggtcacacagatcatatatttagttaactgaaattttt 2430553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 11108111 - 11108153
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||||| |||| |||||||||||||| ||||||||    
T  11108111 tctgaaaaatttcaattaaccaaatatatggtctgtgtgacca 11108153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 543
Target Start/End: Complemental strand, 138726 - 138653
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtg 543  Q
    |||||||||||| ||||| || ||||||||  |||||| | ||||||||| ||||||||||  |||| ||||||    
T  138726 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtg 138653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 543
Target Start/End: Complemental strand, 146747 - 146674
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtg 543  Q
    |||||||||||| ||||| || ||||||||  |||||| | ||||||||| ||||||||||  |||| ||||||    
T  146747 aaatagtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtg 146674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 13767125 - 13767182
Alignment:
Q  294 aatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtct 351  Q
    ||||||||||| ||||| ||||| |||  ||||||| |||||| ||||||||||||||    
T  13767125 aatgtgtacactcctttgtatcactctagaaaatttaagttaaccaaatatatggtct 13767182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 7e-51; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 273 - 587
Target Start/End: Original strand, 38606724 - 38607039
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagt 372  Q
    |||| ||||| ||||| | ||||| | || |||||||| || || |||||||||||||||||||  ||||||||||| | ||||||||||       ||     
T  38606724 caatgataggtagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagc 38606823  T
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaa 472  Q
    || ||||||||||  ||||||||||||||||| |||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||| | ||||||||    
T  38606824 tgcgtgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaa 38606923  T
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgt 571  Q
    ||||||| | |||||  | |||||||| |||| || | ||||||| ||||||||| ||| |||  |||||  |||||| |||||||| |||||| | |||    
T  38606924 tagtggtaacgcaactgaaaaaatgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgt 38607023  T
Q  572 ctaccaatctttattc 587  Q
    |||||||| |||||||    
T  38607024 ctaccaatatttattc 38607039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 370 - 587
Target Start/End: Original strand, 1251470 - 1251687
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| |||||||||| ||||||| |||||||||| |||||||||||| ||||| |||||  ||| |||||||||| | ||| ||| ||||| |  || |    
T  1251470 agttgcgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagtt-catgatcacatttttcaggtttt 1251568  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag- 568  Q
    |||||||||||| |||||  | |||||||| || |||| ||||||||||||||||||| ||| |||  |||||| |||||| |||||||| |||||| |     
T  1251569 aaatagtggtcacgcaactgaaaaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaagga 1251668  T
Q  569 tgtctaccaatctttattc 587  Q
    |||||||||||||||||||    
T  1251669 tgtctaccaatctttattc 1251687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 278 - 559
Target Start/End: Complemental strand, 5573988 - 5573707
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatg-gtctatgtgaccatannnnnnnagttgtg 376  Q
    ||||| |||| |||||||||||||||| | ||| || || ||| ||| |||||||||||  ||||||||  |||| |||||||| |       | ||| |    
T  5573988 ataggtagactcctttaatgtgtacactcttttgtaccactctaaaagatttcagttaactaaatatatatgtctttgtgaccacatttttttaattgcg 5573889  T
Q  377 tgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagt 476  Q
    ||||||||| ||||| | |||||||||| |||||||||||||||||| ||||| ||| ||||||||||| | ||||||| ||||| ||||||||||||||    
T  5573888 tgaccactatttttcaa-aatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagt 5573790  T
Q  477 ggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||| ||||   | |||||||  ||||| ||||||||||||| ||||||| |||  ||  ||| || |||||||||||||||    
T  5573789 ggtcacgcaattgaaaaaatgtagtcacatatatcatatatttggttaactgaaatgttcgagaatgatacaaaagggtgtac 5573707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 559
Target Start/End: Original strand, 5321955 - 5322144
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| |||||||||| ||||  |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||  ||||| | |||||    
T  5321955 agttgcgtgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttct 5322054  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||| || ||| ||||   | |||||||||||||||| | ||||||||| ||||| | ||| |||| |||||| |||||| | ||||||    
T  5322055 aaataatgatcacgcaattgaaaaaatgtgatcacacagaccatatatttggttaattgaaatttttgagagtgatacaaaggagtgtac 5322144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 370 - 587
Target Start/End: Complemental strand, 31596911 - 31596693
Alignment:
Q  370 agttgtgtgaccactagtttt-ccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttc 468  Q
    ||||||||||||| ||||||| ||| |||||||||| |||| ||||||||||||| ||| | || ||||||| |||||  ||||||| ||||| | ||||    
T  31596911 agttgtgtgaccattagtttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttc 31596813  T
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-a 567  Q
    ||||||||||| | |||||  | |||||||| ||||||||| |||||||||  ||||||  || |||||| |||| ||||||  |||||||  ||||| |    
T  31596812 taaatagtggtaacgcaactgaaaaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaaga 31596713  T
Q  568 gtgtctaccaatctttattc 587  Q
    ||||||||||||||||||||    
T  31596712 gtgtctaccaatctttattc 31596693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 322 - 507
Target Start/End: Original strand, 26493282 - 26493466
Alignment:
Q  322 aaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaa 421  Q
    |||||||| | |||||||||||||||||||||||||||| |       ||||| | ||||| || |||| |||||||||||||||||||||| |||||||    
T  26493282 aaaaattttacttaatcaaatatatggtctatgtgaccacattgttttagttgcgcgaccattaatttttcagaatttatttgattaactaaatggaaaa 26493381  T
Q  422 atcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacaca 507  Q
    || || || ||||||| ||||||||||||||||| ||||| | |||||||||||| || |  ||||  | ||||||||||||||||    
T  26493382 atagttgtcacgcgca-tttagttgcgtgaccacatttttcagcttctaaatagtagttacacaactgaaaaaatgtgatcacaca 26493466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 284 - 527
Target Start/End: Original strand, 15714602 - 15714845
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccac 383  Q
    ||||||||||||| |||||||   ||| || || ||||||||||||||||||   ||||||||| | |||||||||| |       ||||| ||||||||    
T  15714602 agacacctttaatatgtacacatttttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccac 15714701  T
Q  384 tagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatg 483  Q
    || |||| |  |||||||||| |||||||||||||||||| ||||| |||  |||||||||| ||||||||  ||||| | ||| |||||||| ||||      
T  15714702 tattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaatagtagtcaca 15714801  T
Q  484 caacaaacaaaatgtgatcacacatatcatatatttagttaact 527  Q
    || |  | |||||||| | ||||| | |||||||||||||||||    
T  15714802 cagctgaaaaaatgtggttacacagaccatatatttagttaact 15714845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 1240894 - 1241004
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| ||||| |||| |||||||||| | ||||||| ||||| | |||||    
T  1240894 agttgtgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagcttct 1240992  T
Q  470 aaatagtggtca 481  Q
    ||||||||||||    
T  1240993 aaatagtggtca 1241004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 566
Target Start/End: Original strand, 29367076 - 29367243
Alignment:
Q  398 ttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatg 497  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | |||| ||||||||||||  |||   | |||||     
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaata 29367175  T
Q  498 tgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    || | ||| | | ||||||||||||||| ||||| |||  |||||| ||| || |||||||| ||||||    
T  29367176 tggttacatagaccatatatttagttaattaaaattttcaagagtgatac-aaggggtgtacacattaa 29367243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 267 - 429
Target Start/End: Original strand, 24575798 - 24575959
Alignment:
Q  267 aatgagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnn 366  Q
    ||||||||||| |||| ||  | ||||| |||||||||||||||| | || | | |||| |||| ||||| |||||||||||||| || |||||||        
T  24575798 aatgagcaatattaggtagtaatctttattgtgtacacccctttt-accactttaaaaagtttcggttaaccaaatatatggtctgtgcgaccatattat 24575896  T
Q  367 nnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggt 429  Q
       |||||| ||||||||| |||||||||||||||||| |||| |||||| |||||| |||||    
T  24575897 tttagttgtctgaccactatttttccagaatttatttggttaaataagtgaaaaaatagtggt 24575959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 568
Target Start/End: Complemental strand, 15714706 - 15714608
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    |||||||||||| ||||| ||||||||||| ||||| | ||||||||||||| ||||| ||| ||||||||||| |||||||  ||||||  |||||||    
T  15714706 aaatagtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtggtacaaaaatgtgtacatattaaag 15714608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 15233318 - 15233241
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||| |||| |||||| |||||| ||||| | ||||||||||||||||||||||||||||| ||||| |||||    
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaat 15233241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 440 - 587
Target Start/End: Complemental strand, 33286263 - 33286115
Alignment:
Q  440 ttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcag 539  Q
    |||||||||||||||| ||||| | |||||||| |||||||| ||||   | |||||||| |||| || | ||||||||| ||||| ||||  |||| ||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggtcacgcagaccatatatttggttaattaaatttttttag 33286164  T
Q  540 agtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 587  Q
    || | |||||| |||||||| ||||||  ||||| ||||||||||||||    
T  33286163 aggggtacaaatgggtgtacacattaagggtgtccaccaatctttattc 33286115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 15233134 - 15233197
Alignment:
Q  288 acctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtct 351  Q
    |||||||||||||||| | |||  || || ||||||||||||||||||||||||||||||||||    
T  15233134 acctttaatgtgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggtct 15233197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 587
Target Start/End: Original strand, 31273578 - 31273773
Alignment:
Q  393 agaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaaca 492  Q
    |||||||||||| |||||| |||| |||||| | | | ||| ||||||||| ||| ||||||  ||||| | ||||||||||| ||||| |||||  | |    
T  31273578 agaatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttctaaataggggtcacgcaactgaaa 31273677  T
Q  493 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 587  Q
    | |||||  |||| | | |||||||||  |||| | ||| |||  |||||| ||||||| ||| ||| |||||| ||| |||||||||||||||||    
T  31273678 acatgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctaccaatctttattc 31273773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 472 - 555
Target Start/End: Complemental strand, 38606837 - 38606754
Alignment:
Q  472 atagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggt 555  Q
    |||||||||| ||| | || ||||| || ||||||||| ||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  38606837 atagtggtcacgcagctaaaaaaatatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggt 38606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 588
Target Start/End: Complemental strand, 32959631 - 32959457
Alignment:
Q  415 tggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcata 514  Q
    ||||||||| ||||| || | ||||||||||| |||||||  ||||||| ||||| ||| ||||||| | ||   | |||||||||||||||| |||||     
T  32959631 tggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaatgtgatcacacaaatcatg 32959532  T
Q  515 tatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattca 588  Q
    ||||| |||||   ||||||| || | |  ||||||  ||||||  ||| ||| |||||||||||||||||||||    
T  32959531 tatttggttaatcgaaaatttccataattgtacaaagtggtgtagacataaaaggtgtctaccaatctttattca 32959457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 28700053 - 28700129
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccata 362  Q
    |||| |||||||||||||| |  ||| ||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  28700053 gacatctttaatgtgtacatcattttgtatcattctaaaaaatttcagttaactaaatatatggt-tatgtgaccata 28700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 24576257 - 24576181
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||  |||||||||||||||||| || || |||  ||||||||| |||| |||||||||||||| ||||||||    
T  24576257 agacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgacca 24576181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 26914702 - 26914631
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagt 542  Q
    |||||||||||| | ||| || |||||||||||||||| |||||||||||||||| || ||| ||||||||||    
T  26914702 aaatagtggtcacgtaactaa-aaaatgtgatcacacaaatcatatatttagttagcttaaatttttcagagt 26914631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 5321973 - 5321907
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaatttt 536  Q
    |||||||||||| ||||| || |||||||| ||||||||  |||||||||| |||||| ||||||||    
T  5321973 aaatagtggtcacgcaactaaaaaaatgtggtcacacatgccatatatttaattaactcaaaatttt 5321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 5322148 - 5322086
Alignment:
Q  295 atgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtga 357  Q
    |||||||||| ||||| ||||| ||| |||||||||| |||| |||||||||||||| |||||    
T  5322148 atgtgtacactcctttgtatcactctcaaaaatttcaattaaccaaatatatggtctgtgtga 5322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 24537977 - 24538037
Alignment:
Q  372 ttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaac 432  Q
    |||||||||||||| ||||||| |||||||||| ||||| |  ||||||||| ||||||||    
T  24537977 ttgtgtgaccactaattttccaaaatttatttggttaaccatatggaaaaatagtggtaac 24538037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 31596715 - 31596783
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||| |||||||| |||| || || | ||||||||| |||||||||||||||||||| | ||||||||    
T  31596715 ttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgacca 31596783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 5573704 - 5573766
Alignment:
Q  296 tgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgac 358  Q
    ||||||||||| ||| |||||||||  || ||||||||||| |||||||||| | ||||||||    
T  5573704 tgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgac 5573766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 15233338 - 15233395
Alignment:
Q  493 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    ||||||| ||||||| |  ||||||||| |||||||||| ||||||||||| ||||||    
T  15233338 aaatgtggtcacacaaactatatatttaattaactaaaatttttcagagtggtacaaa 15233395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 31273720 - 31273687
Alignment:
Q  323 aaaatttcagttaatcaaatatatggtctatgtg 356  Q
    ||||||||| ||||||||||||||||||||||||    
T  31273720 aaaatttcaattaatcaaatatatggtctatgtg 31273687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 3e-50; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 590
Target Start/End: Complemental strand, 31303654 - 31303348
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccac 383  Q
    ||||||||||||||| |||| || ||| || || ||  |||||||||||||||  ||||||||||| | |||||||| |       ||||| ||||||||    
T  31303654 agacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacatttttt-agttgcgtgaccac 31303556  T
Q  384 tagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatg 483  Q
    ||  ||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||| ||||||| ||||| | ||||||||||||||||| |    
T  31303555 tatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaaatagtggtcacg 31303456  T
Q  484 caacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctt 582  Q
    |||   | |||||||| |||| || | ||| ||||| ||| ||| ||| ||||||||||| |||||| || ||||| ||||||  |||||||||||||||    
T  31303455 caattgaaaaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctaccaatctt 31303356  T
Q  583 tattcatg 590  Q
    ||||||||    
T  31303355 tattcatg 31303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 265 - 477
Target Start/End: Complemental strand, 21589844 - 21589632
Alignment:
Q  265 ataatgagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatann 364  Q
    |||| ||||||||||||  | ||||| |||||||||||| || ||| || || ||| ||||||||||||||  |||||||||||||| |||||||| |      
T  21589844 ataaagagcaataatagctaaacacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatt 21589745  T
Q  365 nnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaa 464  Q
         |||||  ||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| || |||||||||||||| ||||||| ||||| |     
T  21589744 tttttagttgcatgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttcag 21589645  T
Q  465 cttctaaatagtg 477  Q
    |||||||||||||    
T  21589644 cttctaaatagtg 21589632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 278 - 519
Target Start/End: Original strand, 5083694 - 5083933
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||| | ||||| | || |||||||| ||||| | |||||||||||||||||||||||||||||||| |||||||| |       ||||  ||    
T  5083694 ataggtagacatccttaatctatatacccctttatatcactttgaaaaatttcagttaatcaaatatatggtctttgtgaccacatttttt-agttacgt 5083792  T
Q  378 gaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtg 477  Q
    |||||||| ||||| |||||||||||  ||||| |||| ||||||| ||||| || ||||||| |||||||||||||  ||||| |||||||||||||||    
T  5083793 gaccactatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgcattt-agttgcgtgaccatatttttcaacttctaaatagtg 5083891  T
Q  478 gtcatgcaacaaacaaaatgtgatcacacatatcatatattt 519  Q
    |||| ||||   | |||||||| ||||||||| |||||||||    
T  5083892 gtcacgcaattgaaaaaatgtggtcacacataccatatattt 5083933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 315 - 588
Target Start/End: Complemental strand, 21548623 - 21548350
Alignment:
Q  315 cattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaag 414  Q
    |||||| |||||||||||||||  ||||||||||||| ||||| ||||       ||||| |||||||||| |||||||||||||||||| |||||||||    
T  21548623 cattctaaaaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactatttttccagaatttatttggttaactaag 21548524  T
Q  415 tggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcata 514  Q
    ||||||||  ||||| |||||||||  |||||||||||||| ||||| | ||| |||||| ||||||  ||||  | ||||| || ||||||||| ||||    
T  21548523 tggaaaaacagtggttacgcgcattcgagttgcgtgaccacatttttcagcttttaaatattggtcacacaactgaaaaaatatggtcacacataccata 21548424  T
Q  515 tatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttattca 588  Q
    | |||  |||||| ||| |||  |||||| ||||||   |||||   |||||| ||||||||| |||||||||||    
T  21548423 t-tttgattaactgaaattttcaagagtggtacaaagaagtgtatatattaaaggtgtctaccgatctttattca 21548350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 272 - 477
Target Start/End: Original strand, 28804882 - 28805089
Alignment:
Q  272 gcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn-- 369  Q
    ||||| ||||| ||||||| ||||| ||||||||| ||| || ||||||  |||||||||||||| ||||||||||||||||||||||| |             
T  28804882 gcaatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacattttttttt 28804981  T
Q  370 -agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttc 468  Q
     ||||||||||||||||  |||||| |||||||||| |||||||||||||||||| |||||  |||||||||| |||| |||||||| ||||| | ||||    
T  28804982 tagttgtgtgaccactatatttccataatttatttggttaactaagtggaaaaatagtggt-ccgcgcattttggttgtgtgaccacatttttcagcttc 28805080  T
Q  469 taaatagtg 477  Q
    |||||||||    
T  28805081 taaatagtg 28805089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 320 - 568
Target Start/End: Complemental strand, 4290992 - 4290745
Alignment:
Q  320 tgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaa 419  Q
    ||||||||||||||||| |||||| ||| ||| | ||||||         ||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  4290992 tgaaaaatttcagttaaccaaataaatgatctgtatgaccacgtttttttagttgcgtgaccactagtttttcagaatttatttggttaactaagtggaa 4290893  T
Q  420 aaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatattt 519  Q
    |||| ||||| |||| ||  |||||||||||||||| ||||| |||||||||||||||||||  ||||  | |||||||| ||| | | | ||||||| |    
T  4290892 aaatagtggtcacgcaca-cttagttgcgtgaccacatttttcaacttctaaatagtggtcactcaactgaaaaaatgtggtcagataaaccatatatct 4290794  T
Q  520 agttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    |||||| ||||  | || |||||| ||||||  ||||| | ||||||||    
T  4290793 agttaattaaatttgtttagagtggtacaaacaggtgtgcacattaaag 4290745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 292 - 587
Target Start/End: Complemental strand, 18313020 - 18312725
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    |||||||| |||| ||||| || || ||||||||||||||| ||| |||||||||||| | |||| | | |       ||||| |||||||||| |||||    
T  18313020 ttaatgtgcacactcctttgtaccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactatttttc 18312921  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaac 491  Q
     |||||||||| | |||||||||||||||||| ||||| ||  ||||||||||||||||| |||  |||| | |||||||||||| || | |||||  |     
T  18312920 aagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcac-attttcagcttctaaatagtagtgacgcaactgaa 18312822  T
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 587  Q
    || ||||| ||||| | | |||||||||  |||| | ||| |||  |||||| |||||| |||| ||| | ||||  ||||||||||||||||||||    
T  18312821 aatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctaccaatctttattc 18312725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 527
Target Start/End: Complemental strand, 20556985 - 20556725
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||| ||| | | ||||| || |||| ||||| ||||| | |||||| ||||||||||  |||||||| |||| | |||||| |           
T  20556985 gagcaatgataggtagatatccttaatatgcacactcctttgtatcactttgaaaattttcagttaactaaatatatagtctgtttgaccacattttttt 20556886  T
Q  370 agttgtgtgaccactagttttc---cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaact 466  Q
     |||| |||||||||| ||||    ||||||||||||| ||||||||||||||||||  |||| ||||| ||||||||||||||||||| ||||| | ||    
T  20556885 ggttgagtgaccactatttttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagct 20556786  T
Q  467 tctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaact 527  Q
    |||||||||||||||  ||||  | ||||| || ||||||  | ||||||||| |||||||    
T  20556785 tctaaatagtggtcacacaactgaaaaaatatggtcacaccgaccatatatttggttaact 20556725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 548
Target Start/End: Original strand, 15958256 - 15958485
Alignment:
Q  320 tgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaa 419  Q
    |||||||||| |||||| |||||||||||||  |||||||| |       |||||||||||||||| |||| ||||||||||||| |||| |||||  ||    
T  15958256 tgaaaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattttttcagaatttatttggttaaataagtaaaa 15958355  T
Q  420 aaa----tcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatat 515  Q
    |||    | ||| | |||| ||||| | |||||||||||| ||||| | ||||||||||||| |||||||||  | |||||||| ||||||| | |||||    
T  15958356 aaaaaaattgtgatcacgcacatttaa-ttgcgtgaccacatttttcagcttctaaatagtg-tcatgcaactta-aaaatgtggtcacacagaccatat 15958452  T
Q  516 atttagttaactaaaaattttcagagtgttaca 548  Q
    |||||||||||| ||| ||| ||||||| ||||    
T  15958453 atttagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 587
Target Start/End: Original strand, 28805138 - 28805234
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 587  Q
    |||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| |||||| |||| ||| ||||||  ||||||||||||||||||||    
T  28805138 aaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctaccaatctttattc 28805234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 28805220 - 28805144
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| |||||||||| |||||||| ||||| |||||||||||| |||||| |||||||||||| | ||||||||    
T  28805220 agacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgacca 28805144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 568
Target Start/End: Original strand, 32964848 - 32964947
Alignment:
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    ||||||||||||| ||||| || || ||||| ||||||| | ||||||| ||||||||| ||| |||| |||||| ||||||||||||||  ||||||||    
T  32964848 taaatagtggtcacgcaactaaaaatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaag 32964947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 5174976 - 5174910
Alignment:
Q  376 gtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcatttta 442  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||| ||||| |||| |||||||    
T  5174976 gtgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 22740076 - 22740144
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||||| || | ||||| ||||||| |||| ||||||||||||||||||||| ||||||||    
T  22740076 ttaatgtgtacacctctatgtatcactctgaaatatttaagttaatcaaatatatggtctgtgtgacca 22740144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 22033253 - 22033147
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    |||||||||||| || ||| || ||||||||||||||| |||||| |||||||||||||| ||||||||||       ||||| |||||||||| ||||     
T  22033253 ttaatgtgtacatcc-tttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccacta-ttttt 22033156  T
Q  392 cagaattta 400  Q
    |||||||||    
T  22033155 cagaattta 22033147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 454
Target Start/End: Original strand, 22740658 - 22740736
Alignment:
Q  376 gtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgacca 454  Q
    ||||| |||| |||| ||||||||||||| ||||||||||||||||||  || | ||||  ||||||||||||||||||    
T  22740658 gtgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgacca 22740736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 5083984 - 5083912
Alignment:
Q  288 acctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||||||| ||||||||||| ||| |||||  ||||||||| || |||||||||||||| | ||||||||    
T  5083984 acctttaatgtatacacccctttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgacca 5083912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 18312739 - 18312815
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| |||| ||||| |||||||| || || |||  ||||||||| ||||||||||||||||||| ||||||||    
T  18312739 agacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatatggtctctgtgacca 18312815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 566
Target Start/End: Original strand, 21589721 - 21589817
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||||||||||||| || |||||||| ||||||| | ||||||||| | ||||| ||| |||| |||||| || ||| || ||||| ||||||    
T  21589721 aaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaa 21589817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 31303365 - 31303441
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| |||||||||||| || ||| ||||| |||||||||||||||| || |||||| |||||||  |||||||    
T  31303365 agacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgacca 31303441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 32964953 - 32964877
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||||||||||| ||||||| ||| ||||| ||| |||||||| ||||||  | ||||||||||| ||||||||    
T  32964953 agacacctttaatgtatacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgacca 32964877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 20556867 - 20556947
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    ||||||||||||  |||| || |||||||| ||| ||| |  |||||||||||||||| |||||||||| |||| ||||||    
T  20556867 aaatagtggtcactcaaccaaaaaaatgtggtcaaacagactatatatttagttaactgaaaattttcaaagtgatacaaa 20556947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 22033158 - 22033238
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    |||||||||||| |||||  | ||||| || ||||||| | ||||||||| ||||||||||| |||||||| || ||||||    
T  22033158 aaatagtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaa 22033238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 21548550 - 21548629
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaa 549  Q
    |||||||||||| ||||| ||  |||| |||||||||| | ||||||||||||||||| ||| |||| ||| || |||||    
T  21548550 aaatagtggtcacgcaactaaacaaatatgatcacacagaccatatatttagttaactgaaattttttagaatggtacaa 21548629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 46943761 - 46943827
Alignment:
Q  396 atttatttgattaactaagtggaaaaa--tcgtggtaacgcgcattttagttgcgtgaccacgtttt 460  Q
    ||||||||| ||||||||||| |||||  | ||||| ||||||||||||||||||||| ||| ||||    
T  46943761 atttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcacatttt 46943827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 20556717 - 20556779
Alignment:
Q  323 aaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccacta 385  Q
    |||||||||||||| |||||||||||||  ||||||||||       ||||||||||||||||    
T  20556717 aaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccacta 20556779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 270 - 519
Target Start/End: Original strand, 1966728 - 1966975
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||| ||||||| ||| ||| ||||||| ||| || || |||||||| |||||||||| |||||||||||||| |||||||| |           
T  1966728 gagcaatgataggtagacacccttactgtatacacccttttgtaccactctgaaaa-tttcagttaaccaaatatatggtctgtgtgaccacatttttt- 1966825  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||| ||||||||||||||||| ||||| | |||||    
T  1966826 agttgcgtgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgca-tttagttgcgtgaccacatttttcagcttct 1966924  T
Q  470 aaatagtggtcatgcaac-aaacaaaatgtgatcacacatatcatatattt 519  Q
    |||||||||||| ||||| ||| |||||||| ||||| || ||||||||||    
T  1966925 aaatagtggtcacgcaactaaaaaaaatgtggtcacatatgtcatatattt 1966975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 264 - 559
Target Start/End: Original strand, 17633229 - 17633523
Alignment:
Q  264 cataatgagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatan 363  Q
    |||||| |||||  |||||  |||||||||||||||||||| | ||| || || || ||||||||| |||||| |||||||||||||| |||||||| |     
T  17633229 cataatcagcaaggataggttgacacctttaatgtgtacactcatttgtaccactccgaaaaattttagttaaccaaatatatggtctgtgtgaccacat 17633328  T
Q  364 nnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttt-t 462  Q
          || ||  ||||||| | || |||| |||||||||| ||||||||||  |||||| ||||| ||||||||||||||||||||||||  |||||      
T  17633329 ttttt-agatgcatgaccacaatttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttca 17633427  T
Q  463 aacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    |||||||| || ||||||| |||||  | |||||||| ||||||| | ||||||||| ||||||| ||| |||||| |||| |||||| ||||||||    
T  17633428 aacttctagat-gtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtac 17633523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 318 - 589
Target Start/End: Original strand, 8740730 - 8741004
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagt---tttccagaatttatttgattaactaag 414  Q
    |||||||||||  ||||||||||||||||||| |||||||||| |       ||||| |||||||||| |   |||||| |||||||||  |||||||||    
T  8740730 tctgaaaaattcaagttaatcaaatatatggtttatgtgaccacatttttttagttg-gtgaccactactacttttccataatttatttagttaactaag 8740828  T
Q  415 tggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaac-aaacaaaatgtgatcacacatatcat 513  Q
    | ||||||| ||||| ||||||||||||| | ||||||||| ||||| | ||||||||||||| ||| |||||  || ||||| || ||||||| |||||    
T  8740829 tagaaaaatagtggtcacgcgcattttag-tacgtgaccacatttttcagcttctaaatagtgatcacgcaactgaaaaaaatatggtcacacagatcat 8740927  T
Q  514 atatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag-tgtctaccaatctttattcat 589  Q
    | ||||  |||||| |||||||| |||||| ||||||||  ||||| |||| ||| |||||||| ||||||||||||    
T  8740928 acatttgattaactgaaaattttgagagtgatacaaaagaatgtacacattgaagatgtctaccgatctttattcat 8741004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 370 - 587
Target Start/End: Complemental strand, 9809190 - 9808972
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| ||||||| |  ||||||| || ||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||||| || ||||| | |||||    
T  9809190 agttgcgtgaccattttttttccataaattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttct 9809091  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-ag 568  Q
    |||||||||||| |||||  | |||||||| |||| || | ||||||||||||||||| ||  |||||| || | |||||||||||||||  |||||  |    
T  9809090 aaatagtggtcacgcaactgaaaaaatgtggtcacgcagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaaggg 9808991  T
Q  569 tgtctaccaatctttattc 587  Q
    |||| ||| ||||||||||    
T  9808990 tgtcaacctatctttattc 9808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 370 - 585
Target Start/End: Complemental strand, 16583712 - 16583496
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| ||||| |||| ||| ||| |||||||||| |||| ||||||||||||| ||||| ||||||||||||||||| ||| ||  ||||| | |||||    
T  16583712 agttgcgtgactactattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttct 16583613  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-ag 568  Q
    |||||||||||| |||||  | |||||||| |||||   | ||||||||| ||||||| ||| |||  |||||| |||||| || ||||| ||||||  |    
T  16583612 aaatagtggtcacgcaactgaaaaaatgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaaggg 16583513  T
Q  569 tgtctaccaatctttat 585  Q
    |||||||||||||||||    
T  16583512 tgtctaccaatctttat 16583496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 587
Target Start/End: Complemental strand, 9810848 - 9810658
Alignment:
Q  398 ttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatg 497  Q
    ||||||| |||||||| ||||||||| | ||| |||| ||||| ||||||||||| || ||||||| ||||||||||||||||| |||||  | ||||||    
T  9810848 ttatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaactgaaaaaatg 9810749  T
Q  498 tgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattc 587  Q
    || | || || | |||||||||| |||||| ||| |||||| |||| |||||||||||||||  |||||  ||||| ||| ||||||||||    
T  9810748 tggtaacgcaaaccatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttattc 9810658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 373 - 531
Target Start/End: Original strand, 33179755 - 33179913
Alignment:
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaa 472  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||| |||| ||||| |  |||||||    
T  33179755 tgtgtgaccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaa 33179854  T
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaa 531  Q
    ||||||||| ||| |  | || || || | ||||||| ||||||||||||||| |||||    
T  33179855 tagtggtcacgcagctgaaaagatatggtaacacataccatatatttagttaattaaaa 33179913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 278 - 486
Target Start/End: Complemental strand, 14351270 - 14351062
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||||| ||||||||| |||  |||| || || ||| ||||| || |||||| |||||||||||| | ||||||||||       ||||| ||    
T  14351270 ataggtagacacccttaatgtgtgcacttctttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgt 14351171  T
Q  378 gaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtg 477  Q
    |||||||| |||  || |||||||||| |||||||||||||||||| ||||| | |  |||||||||||||||| ||| | ||||| |||| ||||||||    
T  14351170 gaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtcatggacattttagttgcgtgatcacatcttttagcttcaaaatagtg 14351071  T
Q  478 gtcatgcaa 486  Q
    || ||||||    
T  14351070 gttatgcaa 14351062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 373 - 487
Target Start/End: Original strand, 33249612 - 33249726
Alignment:
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaa 472  Q
    ||||||||||||| |||| || |||||||||||||||||| |||||||||| ||||| || |||||||||  ||||||||||| ||||| | ||||||||    
T  33249612 tgtgtgaccactactttttcaaaatttatttgattaactaggtggaaaaatagtggtcacacgcattttatgtgcgtgaccacatttttcaccttctaaa 33249711  T
Q  473 tagtggtcatgcaac 487  Q
    ||||||||| |||||    
T  33249712 tagtggtcacgcaac 33249726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 273 - 585
Target Start/End: Complemental strand, 19596996 - 19596680
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn-ag 371  Q
    |||| ||||| |||| || |||||||||||| || ||| || | || || |||||||||||||| ||||||||||||   |||||||| |        ||    
T  19596996 caatgataggtagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttttttag 19596897  T
Q  372 ttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaa 471  Q
     || ||||||||||  ||| ||||||||||||| ||||||||||||  |||| || || | ||||||||||||||||||||||| ||||| | |||||||    
T  19596896 ctgcgtgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaa 19596797  T
Q  472 atagtggtcatgcaac--aaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag- 568  Q
    ||| |||| |  || |  ||| |||||||| |||| |  | ||||||||| || |||  | | ||||||||||| |||||| |||||||| ||||||||     
T  19596796 ataatggttacacagctgaaaaaaaatgtggtcacgctgaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaaga 19596697  T
Q  569 tgtctaccaatctttat 585  Q
    |||||| ||||||||||    
T  19596696 tgtctatcaatctttat 19596680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 390 - 536
Target Start/End: Original strand, 35544433 - 35544578
Alignment:
Q  390 tccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaa 489  Q
    |||| |||||||||  |||| ||||||||||||| ||| | || ||||||| |||||||||||||| ||||| | |||||||||||||||||| ||||      
T  35544433 tccaaaatttatttagttaattaagtggaaaaatagtgatcacacgcattt-agttgcgtgaccacatttttcagcttctaaatagtggtcatacaacgg 35544531  T
Q  490 acaaaatgtgatcacacatatcatatatttagttaactaaaaatttt 536  Q
    | |||||||||||||||||| |||||||||  |||||| ||| ||||    
T  35544532 aaaaaatgtgatcacacataccatatatttgattaactgaaattttt 35544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 462
Target Start/End: Complemental strand, 42908735 - 42908592
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtgg 417  Q
    |||||||||||| |||||| |||||||||||| | |||||||| |       ||||| || ||||||| |||||||||||||||||| ||||||||| ||    
T  42908735 tctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt-agttgagtcaccactatttttccagaatttatttggttaactaagagg 42908637  T
Q  418 aaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt 462  Q
    ||| || ||||| ||||||||||||||||||||| ||| ||||||    
T  42908636 aaacatagtggtcacgcgcattttagttgcgtgatcacatttttt 42908592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 527
Target Start/End: Original strand, 55666844 - 55666974
Alignment:
Q  395 aatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaa 494  Q
    |||||||||| |||||||||||||||||| ||||| |||  |||||||||| ||||||||||||||| | ||| |||||| |||||| |||||  | |||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagtt-cgtgaccacgtttttcagcttataaataatggtcacgcaactga-aaa 55666941  T
Q  495 atgtgatcacacatatcatatatttagttaact 527  Q
    ||||| ||||||| | |||||||||||||||||    
T  55666942 atgtggtcacacagaccatatatttagttaact 55666974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 296 - 454
Target Start/End: Complemental strand, 24669363 - 24669216
Alignment:
Q  296 tgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccaga 395  Q
    ||||||||||||||| || || |||||||||||| ||||||||||||||||||||| |||||||| |       ||||| |||||||||               
T  24669363 tgtgtacacccctttgtaccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccact----------- 24669275  T
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgacca 454  Q
    ||||||||| ||||||||||| |||||| ||||| || || ||||||||||||||||||    
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgacca 24669216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 17633530 - 17633462
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||| ||||||||||||| || || | ||||||||||||||||| |||||||||||||| ||||||||    
T  17633530 ttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgacca 17633462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 19747019 - 19746943
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||| |||||||||||||||||||| |||||||||  ||||||||||||||  ||||| ||||||| | ||||||    
T  19747019 agacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgacca 19746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 19792787 - 19792863
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||| |||||||||||||||||||| |||||||||  ||||||||||||||  ||||| ||||||| | ||||||    
T  19792787 agacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgacca 19792863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 568
Target Start/End: Complemental strand, 17633352 - 17633255
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    |||| ||||||||||| | || |||||||| ||||||| | ||||||||| ||||||||||| ||||| ||||| |||||| | |||||| ||||||||    
T  17633352 aaattgtggtcatgcatctaa-aaaatgtggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaaag 17633255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 559
Target Start/End: Original strand, 24669270 - 24669360
Alignment:
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||||||||||| |||||  | |||||||| ||||||| | |||||||||  |||||| ||| ||||||||||| |||||| ||||||||    
T  24669270 taaatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtac 24669360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 1966841 - 1966758
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgta 558  Q
    ||||||||| ||||| || |||||||| ||||||| | ||||||||| ||||||| ||| ||||||||||| ||||||||||||||    
T  1966841 tagtggtcacgcaactaa-aaaatgtggtcacacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgta 1966758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 505
Target Start/End: Complemental strand, 2433802 - 2433693
Alignment:
Q  395 aatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaa 494  Q
    |||||||||| ||||| ||||| |||||| ||||| ||| |||||||  || | ||||||| ||||| | |||||||||||||||||  ||||  | |||    
T  2433802 aatttatttggttaacaaagtgaaaaaatagtggtcacgtgcatttttttt-catgaccacatttttcagcttctaaatagtggtcaaacaactgaaaaa 2433704  T
Q  495 atgtgatcaca 505  Q
    |||||||||||    
T  2433703 atgtgatcaca 2433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 350
Target Start/End: Original strand, 19596692 - 19596758
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtc 350  Q
    ||||| ||||||||||||||||||||| || || |||||||||| || ||| | |||||||||||||    
T  19596692 agacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtc 19596758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 25007690 - 25007625
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgac 358  Q
    ||||||| ||||||| ||| || ||||||  |||||||||||||| |||||||||||||||||||||    
T  25007690 ttaatgtatacaccc-tttgtaccattctcgaaaatttcagttaaccaaatatatggtctatgtgac 25007625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 42908687 - 42908745
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    |||||||| ||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||    
T  42908687 aaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 9810673 - 9810737
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||| ||||| ||||||||| ||| || || | |||||||||||||||||| |||||||||||    
T  9810673 gacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggt 9810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 16583508 - 16583584
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| |||||| ||||| |||||| || || |||  |||||||||||||| ||||||||||||  |||||||||    
T  16583508 agacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgacca 16583584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 16583694 - 16583773
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    ||||||| |||| ||||| |  |||||||||||||| | | |||||||| ||||||||||||||||||| | |||||||||    
T  16583694 aaatagtagtcacgcaactacaaaaatgtgatcacataaaacatatatt-agttaactaaaaattttcaaaatgttacaaa 16583773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 23048989 - 23048934
Alignment:
Q  535 ttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttattcat 589  Q
    |||||||||||||||| |||||||| |||||| | |||||| ||||||||||||||    
T  23048989 ttcagagtgttacaaacgggtgtacacattaagaatgtctatcaatctttattcat 23048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 8740638 - 8740680
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||  ||||||||||||||||||| ||||||||||    
T  8740638 tctgaaaaattcaagttaatcaaatatatggtttatgtgacca 8740680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 8740988 - 8740910
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccata 362  Q
    ||||| ||| ||||||||||  | ||| ||||| ||| |||| |||||||||||||||| |||| ||| ||||||||||    
T  8740988 agacatcttcaatgtgtacattcttttgtatcactctcaaaattttcagttaatcaaatgtatgatctgtgtgaccata 8740910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 587
Target Start/End: Original strand, 19746939 - 19747033
Alignment:
Q  494 aatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 587  Q
    |||||| ||| ||| | ||| ||||||||||||| ||| |||  ||| || |||||| |||||||| |||| ||||||||||| |||||||||||    
T  19746939 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattc 19747033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 587
Target Start/End: Complemental strand, 19792867 - 19792773
Alignment:
Q  494 aatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcatt-aaagtgtctaccaatctttattc 587  Q
    |||||| ||| ||| | ||| ||||||||||||| ||| |||  ||| || |||||| |||||||| |||| ||||||||||| |||||||||||    
T  19792867 aatgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttattc 19792773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 278 - 587
Target Start/End: Complemental strand, 19280405 - 19280098
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||||| ||||||||||||||| ||| || || |||||||| ||| ||||||||||||||||||||| |||||| | |       ||| ||||    
T  19280405 ataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtggtgt 19280306  T
Q  378 gaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtg 477  Q
    |||||||| |||| || |||||||||| |||||||||||||||| | ||||| ||||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  19280305 gaccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagtg 19280207  T
Q  478 gtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaa-attttcagagtgttacaaaagggtgtactcattaa-agtgtctac 575  Q
    |||| ||| |  | |||||||| |||| || | ||||||||| ||||||||||| |||||   |||| |||||| |||||||| | ||||  ||||||||    
T  19280206 gtcacgcatctgaaaaaatgtggtcactcagaccatatatttggttaactaaaatatttt---agtggtacaaaggggtgtacactttaagggtgtctac 19280110  T
Q  576 caatctttattc 587  Q
    | ||||||||||    
T  19280109 cgatctttattc 19280098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 300 - 566
Target Start/End: Original strand, 1705593 - 1705857
Alignment:
Q  300 tacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaattt 399  Q
    ||||||||||| || || |||||||||||| |||| |  ||||||||||| | |||||  |||       |||||| |||||||||||||||||||| ||    
T  1705593 tacacccctttctaccactctgaaaaatttaagtttactaaatatatggtttgtgtgattatatttttttagttgtatgaccactagttttccagaaatt 1705692  T
Q  400 atttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtg 499  Q
    ||||| ||||||||| |||||||| ||||| ||||||||||||||||| ||||||  ||||| | ||||||||||||||||| ||||| |  ||||| ||    
T  1705693 atttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttctaaatagtggtcacgcaacta--aaaatatg 1705790  T
Q  500 atcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||||||||| ||||| ||||||| ||| |||| | | || |||| |||| ||||| ||||||    
T  1705791 atcacacatatcatgtatttggttaactgaaattttttacaatgatacacaaggatgtacacattaa 1705857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 273 - 527
Target Start/End: Original strand, 42637855 - 42638106
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagt 372  Q
    |||||||||| ||||||| |||||||| ||| |||||| || ||  ||||||||||||| |||| |||||||||  | | |||||||  |       |||    
T  42637855 caataataggtagacacccttaatgtgcacatccctttgtacca--ctgaaaaatttcaattaaccaaatatattatttgtgtgaccgcatatttt-agt 42637951  T
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaa 472  Q
    ||| ||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||| | ||||||||    
T  42637952 tgtctgaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttctaaa 42638051  T
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaact 527  Q
    ||||||||| |||||  | |||||||| ||| | ||| |||||||||||||||||    
T  42638052 tagtggtcacgcaactgaaaaaatgtggtcatatataccatatatttagttaact 42638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 270 - 587
Target Start/End: Complemental strand, 3823867 - 3823549
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||| ||||||| ||||| ||| ||||| ||| ||  | || |||||||| ||||||| ||||||||| |||| ||||||||             
T  3823867 gagcaatgataggtagacacccttaatatgttcacccgtttgtactactcagaaaaattccagttaaccaaatatattgtctgtgtgaccac-gtttttt 3823769  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt--aactt 467  Q
    ||||| |||||||||| ||||||| |||||||||| |||||||||||||||||  ||||| || |||||||||||||||||||||  ||||||  | |||    
T  3823768 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaaa-gtggtcacacgcattttagttgcgtgaccatatttttttcagctt 3823670  T
Q  468 ctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa- 566  Q
     ||||||||||||| |||||| | |||||||| ||||||| | |||||| || ||||||| ||| |||  |||||| |||||| |||||||| ||||||     
T  3823669 ataaatagtggtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaag 3823570  T
Q  567 agtgtctaccaatctttattc 587  Q
     |||||||| |||||||||||    
T  3823569 ggtgtctactaatctttattc 3823549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 270 - 587
Target Start/End: Complemental strand, 3786175 - 3785860
Alignment:
Q  270 gagcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnn 369  Q
    ||||||| ||||| ||||||| ||||| ||| ||||| |||  | || || |||||||| ||||||| ||||||||| |||| ||||||||             
T  3786175 gagcaatgataggtagacacccttaatatgttcacccgttt--accactcagaaaaattccagttaaccaaatatattgtctgtgtgaccac-gtttttt 3786079  T
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt-aacttc 468  Q
    ||||| |||||||||| ||||||| |||||||||| |||||||||||||||||  ||||| ||||||||||||||||||||||||  |||||| | |||     
T  3786078 agttgcgtgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagctta 3785980  T
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-a 567  Q
    ||||||||||||| | |||| | |||||||| ||||||| | |||| | || ||||||| ||| |||  |||||| |||||| |||||||| ||||||      
T  3785979 taaatagtggtcacgtaacagaaaaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagg 3785880  T
Q  568 gtgtctaccaatctttattc 587  Q
    ||||||||||||||||||||    
T  3785879 gtgtctaccaatctttattc 3785860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 284 - 480
Target Start/End: Original strand, 26308547 - 26308743
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccac 383  Q
    ||||||||||||| |||||||   ||| ||||| | |||||||| ||||||||  ||||||||||| | |||||||| |       ||||||||||||||    
T  26308547 agacacctttaatatgtacacttttttgtatcactttgaaaaatatcagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgaccac 26308646  T
Q  384 tagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtc 480  Q
    || |||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||| |||||||||||| || || | ||||||||||||||||    
T  26308647 taattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttctaaatagtggtc 26308743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 272 - 527
Target Start/End: Complemental strand, 5342090 - 5341835
Alignment:
Q  272 gcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnag 371  Q
    ||||| ||||| ||||| |  ||||| |||||||||||| ||  | ||||||||||||||||||||| |||||||||||| |||||||| |       ||    
T  5342090 gcaatgataggtagacatccctaatgcgtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttag 5341991  T
Q  372 ttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaa 471  Q
    |||||| |||| ||  ||| ||||||||||||| |||||||||||||||||| ||||| |   | ||||||||||  ||||||| ||||| |||||||||    
T  5341990 ttgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttctaa 5341891  T
Q  472 atagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaact 527  Q
    |||||||||| ||| | || ||||| || ||||||| | |||||||||| ||||||    
T  5341890 atagtggtcacgcagctaaaaaaatatggtcacacaaaccatatatttaattaact 5341835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 273 - 479
Target Start/End: Complemental strand, 31545829 - 31545623
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagt 372  Q
    |||| ||||| |||||  |||||| |||||| |  ||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||| |       |||    
T  31545829 caattataggtagacaattttaatatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagt 31545730  T
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaa 472  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||||| ||||| | || ||||||||||| |||||||| ||||| | ||||||||    
T  31545729 tgtgtgaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttctaaa 31545630  T
Q  473 tagtggt 479  Q
    |||||||    
T  31545629 tagtggt 31545623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 320 - 550
Target Start/End: Complemental strand, 44080422 - 44080192
Alignment:
Q  320 tgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaa 419  Q
    |||||||||||||||||||||  |||| |||| ||| |||| |       ||||||| |||||||| ||||||| ||||| |||| ||||||||||||||    
T  44080422 tgaaaaatttcagttaatcaaggatatagtctgtgttaccacatttttttagttgtgcgaccactatttttccaaaatttttttggttaactaagtggaa 44080323  T
Q  420 aaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaac-aaacaaaatgtgatcacacatatcatatatt 518  Q
    |||| ||||  |||| ||||||||||  |||||||| ||||| ||||||||||||||||||| |||||   | ||||| || ||||||| || |||||||    
T  44080322 aaatagtgggcacgcacattttagtt-tgtgaccacatttttcaacttctaaatagtggtcacgcaactgcaaaaaatatggtcacacagattatatatt 44080224  T
Q  519 tagttaactaaaaattttcagagtgttacaaa 550  Q
    | ||||||| ||| | ||||||||| ||||||    
T  44080223 tggttaactgaaattgttcagagtggtacaaa 44080192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 377 - 486
Target Start/End: Original strand, 4169105 - 4169214
Alignment:
Q  377 tgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagt 476  Q
    |||| |||| |||| ||||||||||||| |||||||| ||||||||| ||||| |||| |||||||||||||| ||||| ||||| | ||||||||||||    
T  4169105 tgactactattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagt 4169204  T
Q  477 ggtcatgcaa 486  Q
    ||||| ||||    
T  4169205 ggtcacgcaa 4169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 381 - 587
Target Start/End: Original strand, 9710728 - 9710929
Alignment:
Q  381 cactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtc 480  Q
    |||||||||  ||||||||||||| |||||||||||||||||| ||||| | | | | |||||||||||||||||  |||| | ||||||| ||||||||    
T  9710728 cactagtttctcagaatttatttggttaactaagtggaaaaatagtggtcaagtgta-tttagttgcgtgaccacagttttcagcttctaagtagtggtc 9710826  T
Q  481 atgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaat 579  Q
    | |||||  | ||||| || |||     | ||||||||| ||||||| ||| ||||||||||| |||||| ||||||||  |||||  || |||||||||    
T  9710827 acgcaaccgaaaaaatatggtca-----accatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaat 9710921  T
Q  580 ctttattc 587  Q
    ||||||||    
T  9710922 ctttattc 9710929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 487
Target Start/End: Complemental strand, 22432524 - 22432329
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||||| ||| || || | |||||||||| ||| ||||||||||||||||| |||||| | |       |||||  ||||||||| ||||     
T  22432524 ttaatgtgtacacccttttgtagcactttgaaaaatttgagtaaatcaaatatatggtctgtgtgactacatttttttagttgcatgaccactatttttt 22432425  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaac 487  Q
    || |||||||||| | ||||| |||||||||| ||||  || |||||||||||||  ||||||| ||||| | ||| |||||||||| || |||||    
T  22432424 cataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagcttttaaatagtggacacgcaac 22432329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 370 - 474
Target Start/End: Complemental strand, 19624421 - 19624317
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    |||||||||||||| | ||||||||||||||| || |||||||||||||||||| ||||| ||| |||||||||||| ||| |||| | ||||| ||| |    
T  19624421 agttgtgtgaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttat 19624322  T
Q  470 aaata 474  Q
    |||||    
T  19624321 aaata 19624317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 463
Target Start/End: Complemental strand, 27707837 - 27707696
Alignment:
Q  322 aaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaa 421  Q
    |||||||| ||||||||||||||||||||| ||||||||||        ||||  || |||||| |||||||||||||||||| ||||  ||||| ||||    
T  27707837 aaaaatttaagttaatcaaatatatggtctctgtgaccatatatttttggttgcatgtccactatttttccagaatttatttggttaatcaagtgaaaaa 27707738  T
Q  422 atcgtggtaacgcgcattttagttgcgtgaccacgtttttta 463  Q
    || ||||| | || ||||||||||| | |||||| |||||||    
T  27707737 atagtggtcatgcacattttagttgtgcgaccacatttttta 27707696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 13358110 - 13358200
Alignment:
Q  395 aatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaa 486  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||| ||| |||||||  ||||| | |||||||||| |||||||||||    
T  13358110 aatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaata-tggtcatgcaa 13358200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 584
Target Start/End: Complemental strand, 11509958 - 11509804
Alignment:
Q  431 acgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaa 530  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||  ||||| ||||   | |||||||| ||||||| |||  |||||| ||||  | ||    
T  11509958 acgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggtcacacaaatcgcatatttggttatttgaa 11509859  T
Q  531 aattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatcttta 584  Q
    | |||| |||||| |||||| |||||||| ||||||  ||||||| |||||||||    
T  11509858 atttttaagagtggtacaaaggggtgtacacattaagtgtgtctatcaatcttta 11509804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 27079291 - 27079381
Alignment:
Q  372 ttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt 462  Q
    ||||| ||| |||| ||||| | |||||||||||||||||||||||||||||  |||| ||||||||||||| | ||||||||| ||||||    
T  27079291 ttgtgcgacgactatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27079381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 27085088 - 27085178
Alignment:
Q  372 ttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt 462  Q
    ||||| ||| |||| ||||| | |||||||||||||||||||||||||||||  |||| ||||||||||||| | ||||||||| ||||||    
T  27085088 ttgtgcgacgactatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacatttttt 27085178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 18733676 - 18733611
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| ||||||  |||||||||||    
T  18733676 agacacctttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggt 18733611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 568
Target Start/End: Complemental strand, 27335406 - 27335307
Alignment:
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    |||||||| |||| ||||| || |||||||| ||||||||| |||||  || ||||||| |||||||||||| || |||||| |||||||| ||||||||    
T  27335406 taaatagttgtcacgcaactaaaaaaatgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaag 27335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 461
Target Start/End: Original strand, 34627195 - 34627383
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagt 372  Q
    ||||||||||  |||||| ||||| |||| || | ||| ||  ||| || ||||||| |||||||||||||||| || | ||||||||||       |||    
T  34627195 caataataggttgacacccttaatatgtatactcatttgtactattatggaaaatttaagttaatcaaatatatagtttctgtgaccatattttttaagt 34627294  T
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttt 461  Q
    || ||||| |||| ||||   ||||||||||| |||||||| |||||||||  |||| ||  | ||||||||||||||||||| |||||    
T  34627295 tgcgtgactactatttttttcgaatttatttggttaactaaatggaaaaataatggttacatgtattttagttgcgtgaccacattttt 34627383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 27335402 - 27335479
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||| |||||||||||||||||| ||||| ||| | |||||||||| |||||||| ||||| | |||||||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaat 27335479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 39126360 - 39126188
Alignment:
Q  291 tttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccacta--gtt 388  Q
    ||||||||||||||  |||| ||| |||||||||||||| |||||| |||||||||| ||| |||||| | |       ||||| ||||| ||||   ||    
T  39126360 tttaatgtgtacacttctttgtattattctgaaaaatttaagttaaccaaatatatgatctgtgtgacaacatttttttagttgcgtgactactattttt 39126261  T
Q  389 ttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt 462  Q
    ||  | |||||||||| |||||||||||||||||| ||| |  ||||| |||||||||||| ||||| ||||||    
T  39126260 ttttaaaatttatttggttaactaagtggaaaaatagtgatcgcgcgc-ttttagttgcgtaaccacatttttt 39126188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 3823563 - 3823639
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| ||||||||||||||||||| || || |||  |||||||||||||| ||| |||||||||| ||||||||    
T  3823563 agacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgacca 3823639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 470 - 566
Target Start/End: Original strand, 22432428 - 22432524
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||||||||||||| || |||||||  ||||||| | |||||||||  || ||| ||| |||||| |||| ||||||||||||||| ||||||    
T  22432428 aaatagtggtcatgcaactaaaaaaatgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaa 22432524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 19280317 - 19280391
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa 566  Q
    |||||||  ||||||| | |||||||||  |||||||||||||||||||||| |||||| |||||||| ||||||    
T  19280317 aaaatgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaa 19280391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 33488210 - 33488280
Alignment:
Q  288 acctttaatgtgtacacccctttttatcattctgaaaaa-tttcagttaatcaaatatatggtctatgtga 357  Q
    |||||||||||||||||| |||| ||  ||||||||||| |||||||||||||||||||| |||| |||||    
T  33488210 acctttaatgtgtacacctctttgtactattctgaaaaattttcagttaatcaaatatatagtctgtgtga 33488280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 9710907 - 9710850
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    ||||| ||||||||||||| || || ||||||||||||||||||| ||||||||||||    
T  9710907 ttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggt 9710850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 27364903 - 27364960
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttc 330  Q
    |||| ||||| |||||| |||||||||||||||||||| || ||||||||||||||||    
T  27364903 caatgataggtagacacatttaatgtgtacacccctttataccattctgaaaaatttc 27364960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 42481409 - 42481300
Alignment:
Q  377 tgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagt 476  Q
    |||||| || |||| ||||||||||||| |||||||||| |||||||  |||| |||  ||||||||||| |||||||  ||||| |  || ||||||||    
T  42481409 tgaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagt 42481310  T
Q  477 ggtcatgcaa 486  Q
    ||||| ||||    
T  42481309 ggtcacgcaa 42481300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 3785874 - 3785950
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| ||||||||||||||||||| || || |||  |||||||||||||| ||| | |||||||| ||||||||    
T  3785874 agacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgacca 3785950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 18733595 - 18733670
Alignment:
Q  493 aaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    ||||||| |||| |||| ||||||||||||||||| ||| |||||||| || || ||| |||||||| ||||||||    
T  18733595 aaatgtggtcacccataccatatatttagttaacttaaatttttcagaatggtataaaggggtgtacacattaaag 18733670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 447
Target Start/End: Complemental strand, 11501464 - 11501309
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||| ||||| || || | |  ||||||| |||||| |||||||||| ||| |||||||  |       ||||| || | ||||| ||||     
T  11501464 ttaatgtgtacactcctttataccactttagaaaatttaagttaaccaaatatatgatctgtgtgaccgcagttttttagttgcgttagcactatttttt 11501365  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgc 447  Q
     | |||||||||| |||||||| ||||||||| ||||| |||| ||||||||||||    
T  11501364 taaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagttgc 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 27335307 - 27335377
Alignment:
Q  290 ctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||||||||||||||||| || ||||||||||| ||| |||||| |||  ||||||| | ||||||||    
T  27335307 ctttaatgtgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgacca 27335377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 1705678 - 1705593
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgta 558  Q
    |||||||||| |||| || ||||| | |||||||| | |||||||||||| |||| ||| ||||||||||| || ||| |||||||    
T  1705678 tagtggtcatacaactaaaaaaatataatcacacaaaccatatatttagtaaacttaaatttttcagagtggtagaaaggggtgta 1705593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 55165145 - 55165108
Alignment:
Q  386 gttttccagaatttatttgattaactaagtggaaaaat 423  Q
    |||||||||||||||||||| |||||||||||||||||    
T  55165145 gttttccagaatttatttgaataactaagtggaaaaat 55165108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 26308824 - 26308772
Alignment:
Q  297 gtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    ||||||||| |||| ||| | |||||||| |||||||||||||||||||||||    
T  26308824 gtgtacacctctttgtataactctgaaaattttcagttaatcaaatatatggt 26308772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 27707587 - 27707651
Alignment:
Q  285 gacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||||||||| |||| ||| |||| ||||||| | ||||| |||| |||||||||||||||||    
T  27707587 gacacctttaatttgtatacctctttatatcattttaaaaaaattcaattaatcaaatatatggt 27707651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 349
Target Start/End: Complemental strand, 33488451 - 33488373
Alignment:
Q  271 agcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||| ||||  |||||||||||||||||| || | ||| ||| | |||||||||||| ||||||  |||||||||||    
T  33488451 agcaatgatagttagacacctttaatgtgtatactcatttatataactctgaaaaatttaagttaactaaatatatggt 33488373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 39126263 - 39126333
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcaga 540  Q
    ||||||| |||| ||||| || |||||||  ||||||| ||||||||||| ||||||| ||| ||||||||    
T  39126263 aaatagtagtcacgcaactaaaaaaatgttgtcacacagatcatatatttggttaacttaaatttttcaga 39126333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 27326047 - 27326124
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||  ||||| || ||||||||| ||||| ||  | ||||||||||||||||||| |||||||  ||||||||    
T  27326047 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27326124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 27332284 - 27332361
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||  ||||| || ||||||||| ||||| ||  | ||||||||||||||||||| |||||||  ||||||||    
T  27332284 atttatttagttaaccaactggaaaaatagtggtcacatgtattttagttgcgtgaccacattttttagtttctaaat 27332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 461
Target Start/End: Original strand, 27365008 - 27365073
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttt 461  Q
    ||||||||| |||| ||||||||||||| ||||| || || ||||||| |||||||| || |||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacattttt 27365073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 33488333 - 33488406
Alignment:
Q  469 taaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagt 542  Q
    ||||||||||||  ||||| || || ||| | ||| ||||| ||||||||||||||||| ||| ||||||||||    
T  33488333 taaatagtggtcgcgcaactaaaaatatgcggtcatacataccatatatttagttaacttaaatttttcagagt 33488406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 320 - 550
Target Start/End: Original strand, 152 - 382
Alignment:
Q  320 tgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtggaa 419  Q
    ||||||||||||||||| ||||||||||| || ||||| || |       ||||| |||||||||| |||| || || |||||||  ||| |||||||||    
T  152 tgaaaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccactaatttttcaaaaattatttggataagtaagtggaa 251  T
Q  420 aaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatattt 519  Q
    |||| ||||| | ||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||  | ||| ||||  |||||| | |||||||||    
T  252 aaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaactgaaaaagtgtggccacacagaccatatattt 351  T
Q  520 agttaactaaaaattttcagagtgttacaaa 550  Q
     ||||||| ||||||||||||||| ||||||    
T  352 ggttaactgaaaattttcagagtggtacaaa 382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 404 - 334
Alignment:
Q  286 acacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtg 356  Q
    ||||| ||||| |||||| | |||| || || |||||||| |||||||||| |||||||||||||| ||||    
T  404 acacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtg 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 576
Target Start/End: Complemental strand, 217 - 112
Alignment:
Q  473 tagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttc-agagtgttacaaaagggtgtactcattaaag-tg 570  Q
    ||||||||| ||||| || | ||||||||||||||   ||||||||| ||||||| ||| ||||| |||||| |||||||   ||||| |||||||| ||    
T  217 tagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatg 118  T
Q  571 tctacc 576  Q
    ||||||    
T  117 tctacc 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 292 - 581
Target Start/End: Complemental strand, 22169650 - 22169361
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||| ||||||||| ||| || || |||||||| ||| |||||| ||||| |||| | | |||||||| |       ||||| ||||||| || ||||     
T  22169650 ttaatctgtacaccc-tttgtaccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccacatttttttagttgcgtgaccattatttttt 22169552  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaac 491  Q
    || |||||||||| ||||||| || ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||  |     
T  22169551 caaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagtggtcacgcaactgaa 22169452  T
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatct 581  Q
    |||||||||||||| ||  ||||||||||||||||| ||| |||  | | || ||||| ||||||||| ||||||  ||||||||||||||    
T  22169451 aaaatgtgatcacatattccatatatttagttaactgaaattttcaaaaatgatacaatagggtgtacacattaagggtgtctaccaatct 22169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 292 - 487
Target Start/End: Complemental strand, 35922926 - 35922731
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    |||||||||||||| |||| ||||| | |||||||||| |||||| ||||| |||||||| || |||||||       |||||  ||||||||| ||||     
T  35922926 ttaatgtgtacaccgctttgtatcactttgaaaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttgcatgaccactatttttt 35922827  T
Q  392 cagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaac 487  Q
    ||||||||||||| |||||||| ||||||||| ||||| |  |||||||||||||||||||||| ||||| | ||||||||||||||||| |||||    
T  35922826 cagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgcaac 35922731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 318 - 586
Target Start/End: Complemental strand, 13312766 - 13312498
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtgg 417  Q
    ||||||||||||||||||| || ||||||| | | |||||||| |       ||||| |||||||||| ||||||| |||||||||| ||||||||||||    
T  13312766 tctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactatttttccataatttatttggttaactaagtgg 13312667  T
Q  418 aaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatat 517  Q
    |||||| || |  ||||||||||||||||||||||||| ||||| | ||||||||||| |||||  ||||  | |||||||| ||||| | | |||||||    
T  13312666 aaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttctaaatagcggtcacccaactga-aaaatgtgttcacatagaccatatat 13312568  T
Q  518 ttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa-gtgtctaccaatctttatt 586  Q
    || ||||| | ||| |||  | | |  ||||||||||||||| ||||||| || ||||||||||||||||    
T  13312567 ttggttaattgaaattttcgaaaatagtacaaaagggtgtacacattaaaggtatctaccaatctttatt 13312498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 278 - 471
Target Start/End: Complemental strand, 42034964 - 42034771
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||| |||||||| ||||| |||||| || || ||| ||||||||||||| |||||||||||||| | ||| | || |       ||||| ||    
T  42034964 ataggtagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgtaatcacatttttttagttgcgt 42034865  T
Q  378 gaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaa 471  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||| | |||||||    
T  42034864 gaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 42034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 273 - 422
Target Start/End: Complemental strand, 15221777 - 15221628
Alignment:
Q  273 caataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagt 372  Q
    |||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||| |||||||| |       | |    
T  15221777 caatgataggcagacacctttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaat 15221678  T
Q  373 tgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaa 422  Q
    ||||||||||||| |||| ||||||||||||  |||| ||||||||||||    
T  15221677 tgtgtgaccactattttttcagaatttatttagttaattaagtggaaaaa 15221628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 370 - 587
Target Start/End: Original strand, 38521961 - 38522176
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||| ||||||| |||||||| |||||||||||  ||||||||||| |||||| ||||| |||||||||||| | |||||||||| ||||| | |||||    
T  38521961 agttgcgtgaccattagttttctagaatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttct 38522059  T
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag- 568  Q
    |||||||||||||||||   | |||||||| ||||| | | ||||||||| ||||| |||||| ||||| || | ||| || |||||||| | ||||||     
T  38522060 aaatagtggtcatgcaattgaaaaaatgtggtcacatagaccatatatttggttaattaaaaaatttcaaag-gatac-aaggggtgtacacgttaaaga 38522157  T
Q  569 tgtctaccaatctttattc 587  Q
    ||||||| |||||||||||    
T  38522158 tgtctactaatctttattc 38522176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 381 - 559
Target Start/End: Original strand, 19621477 - 19621654
Alignment:
Q  381 cactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaact-tctaaatagtggt 479  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||  ||    ||||||||||    
T  19621477 cactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgtttttt--ctggaaaaatagtggt 19621574  T
Q  480 catgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    || ||||     |||||||| ||||||||| ||||||||| ||||||| ||| |||||||| || |||||| | ||||||    
T  19621575 cacgcaaatggaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaaggagtgtac 19621654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 318 - 527
Target Start/End: Original strand, 33958921 - 33959129
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttccagaatttatttgattaactaagtgg 417  Q
    |||||||||||||| |||| |||||||||||||||||| | || |       || ||  ||||||| | |||||||||||||||||| | ||||||||||    
T  33958921 tctgaaaaatttcacttaaccaaatatatggtctatgtaatcacatttttttagctgcatgaccacaatttttccagaatttatttggtcaactaagtgg 33959020  T
Q  418 aaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatat 517  Q
    |||||| ||||| || || ||||||||||||||||||  ||||| |  |||||||||||||||| ||| |  | ||||||| |||||| | || ||||||    
T  33959021 aaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaatagtggtcacgcagctgaaaaaatgtaatcacatagat-atatat 33959119  T
Q  518 ttagttaact 527  Q
    || |||||||    
T  33959120 tttgttaact 33959129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 43461694 - 43461805
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    ||||||||||| |||| |||| ||||||||||||| || ||||||||||||||| ||||| ||| | |||||||||||||||||   ||||| |||||||    
T  43461694 agttgtgtgacaactattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttct 43461793  T
Q  470 aaatagtggtca 481  Q
    ||||||||||||    
T  43461794 aaatagtggtca 43461805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 370 - 587
Target Start/End: Complemental strand, 31189693 - 31189474
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttct 469  Q
    |||||||| || ||||  ||||||||||||||||||||||| |||||| ||||| ||||| ||   |||||||||||||||| ||| ||||| | |||||    
T  31189693 agttgtgtaactactatgtttccagaatttatttgattaaccaagtgg-aaaatagtggtcacaaacattttagttgcgtgatcacatttttcagcttct 31189595  T
Q  470 aaatagtggtcatgcaa--caaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaa 567  Q
    |||||||  ||||||||    |  |||||||| |||||||||  |||||||| ||||||| ||| |||  |||||| ||||||| | |||||  ||||||    
T  31189594 aaatagtaatcatgcaattggacaaaaatgtggtcacacatactatatatttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaa 31189495  T
Q  568 -gtgtctaccaatctttattc 587  Q
     |||||| |||||||||||||    
T  31189494 ggtgtctgccaatctttattc 31189474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 470 - 559
Target Start/End: Original strand, 22169555 - 22169643
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtac 559  Q
    ||||| |||||| ||||| || |||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||    
T  22169555 aaataatggtcacgcaactaaaaaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtggtac-aaagggtgtac 22169643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 35922628 - 35922696
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  35922628 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgacca 35922696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 43262897 - 43262821
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    ||||||| ||||||||||||||||||| ||  | | ||||||||||||||||| |||||||||||||| ||||||||    
T  43262897 agacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgacca 43262821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 470 - 552
Target Start/End: Original strand, 13312696 - 13312778
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaag 552  Q
    |||||||||||| ||||| || |||||||| ||||||| ||||||||| | ||||||| ||| ||||||||||| ||||||||    
T  13312696 aaatagtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaaaag 13312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 30704398 - 30704464
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgtttttt 462  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||||| | |||||| ||||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacatttttt 30704464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 43262708 - 43262770
Alignment:
Q  399 tatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttt 461  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||    
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacattttt 43262770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 487 - 586
Target Start/End: Complemental strand, 35922707 - 35922607
Alignment:
Q  487 caaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaa-agtgtctaccaatctttat 585  Q
    |||| |||||||| ||||||||| |||||||||  |||||| ||| ||||||||||| |||||| || ||||| ||||||  ||||||||| ||||||||    
T  35922707 caaaaaaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttat 35922608  T
Q  586 t 586  Q
    |    
T  35922607 t 35922607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 19621656 - 19621593
Alignment:
Q  297 gtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgacca 360  Q
    |||||||| ||||| || |||||||||||||||||||||| |||||||||||| | ||||||||    
T  19621656 gtgtacactcctttgtaccattctgaaaaatttcagttaaccaaatatatggtatgtgtgacca 19621593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 568
Target Start/End: Original strand, 15221662 - 15221760
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaag 568  Q
    ||||||||||||  |||  || |||||||| ||||||| | ||||||||||||||||| ||| |||||||| || |||||| | |||||| ||||||||    
T  15221662 aaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaag 15221760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 519
Target Start/End: Original strand, 36169394 - 36169475
Alignment:
Q  438 ttttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatattt 519  Q
    |||||||||||||||||  ||||| | ||||||||||||||||| |||||  | | |||||| ||||||||| |||||||||    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggtcacacataccatatattt 36169475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 370 - 449
Target Start/End: Complemental strand, 30045964 - 30045885
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgt 449  Q
    ||||||||||||| || |||  | ||||||||||| |||| ||| ||||||||| ||||| ||||| |||||||||||||    
T  30045964 agttgtgtgaccattattttcaccgaatttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttgcgt 30045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 13312515 - 13312584
Alignment:
Q  288 acctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtga 357  Q
    ||||||||||||||||||| ||| ||  ||| |  ||||||||| |||| ||||||||||||||||||||    
T  13312515 acctttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtga 13312584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 2477370 - 2477302
Alignment:
Q  370 agttgtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcat 438  Q
    ||||| ||| |||||| |||| ||||||||||||| |||||||||| ||||||| ||||  ||||||||    
T  2477370 agttgcgtggccactatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 16095519 - 16095587
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatat 346  Q
    ||||| |||||| |||||||||||||||||||| || || |||  ||||||||| |||| |||||||||    
T  16095519 ataggtagacacatttaatgtgtacacccctttctaccactctcgaaaatttcaattaaccaaatatat 16095587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 576
Target Start/End: Original strand, 35922830 - 35922936
Alignment:
Q  470 aaatagtggtcatgcaacaaacaaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaaagggtgtactcattaaagt 569  Q
    ||||||||||||||||||  | ||||| || || |||| | |||| |||| ||||||| ||| |||||| |||| ||||||  ||||||| ||||||  |    
T  35922830 aaatagtggtcatgcaacttaaaaaatatggtcccacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacattaagat 35922929  T
Q  570 gtctacc 576  Q
    |||||||    
T  35922930 gtctacc 35922936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 36169395 - 36169337
Alignment:
Q  492 aaaatgtgatcacacatatcatatatttagttaactaaaaattttcagagtgttacaaa 550  Q
    |||||||| |||||| || ||||||||| ||||||||||| |||||| |||| ||||||    
T  36169395 aaaatgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaa 36169337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 43461903 - 43461797
Alignment:
Q  278 ataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgt 377  Q
    ||||| ||||||  |||||||||  |||||||| || || | |  ||||||||||||||||||||||||||||| || |||||||       ||||||||    
T  43461903 ataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatatggtctttg-gaccatattttttcagttgtgt 43461805  T
Q  378 gaccacta 385  Q
    ||||||||    
T  43461804 gaccacta 43461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 7156182 - 7156105
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||| |||| |||||||||||||  |||| ||||  |||||||||||| || ||| ||||| | |||||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaat 7156105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 22169369 - 22169442
Alignment:
Q  284 agacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtga 357  Q
    ||||||| |||||||||||||||  || ||||||| |  ||||||||||||||  ||||||||||  |||||||    
T  22169369 agacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtga 22169442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 30704331 - 30704364
Alignment:
Q  318 tctgaaaaatttcagttaatcaaatatatggtct 351  Q
    |||| |||||||||||||||||||||||||||||    
T  30704331 tctgtaaaatttcagttaatcaaatatatggtct 30704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 374 - 487
Target Start/End: Original strand, 24018 - 24130
Alignment:
Q  374 gtgtgaccactagttttccagaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||||||||||| ||||||||||||| | || ||||||||||||| ||||| ||||||||||||  ||||| ||||| ||||||| |||||||||    
T  24018 gtgtgaccactagtttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta-atgcgtaaccacattttttagcttctaaat 24116  T
Q  474 agtggtcatgcaac 487  Q
    ||||||||||||||    
T  24117 agtggtcatgcaac 24130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 487
Target Start/End: Original strand, 10631 - 10725
Alignment:
Q  393 agaatttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaatagtggtcatgcaac 487  Q
    |||||||||||| ||||||||||||||||||  |||| ||| | ||||||||||||||||||| |||||||  || |||||||||||||||||||    
T  10631 agaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtggtcatgcaac 10725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 112235 - 112158
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttttaacttctaaat 473  Q
    ||||||||  |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| | |||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaat 112158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 21420 - 21545
Alignment:
Q  279 taggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtg 378  Q
    |||| |||||| ||||||||||||| || ||| || |||| | ||||||||||||||| |||||||| ||||| ||| | ||||       ||||| |||    
T  21420 taggtagacacttttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaatatacggtctgtgtaagcatatattttaagttgcgtg 21519  T
Q  379 accactagttttccagaatttatttg 404  Q
    |||| || ||||||||||||||||||    
T  21520 accattatttttccagaatttatttg 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 87112 - 87047
Alignment:
Q  396 atttatttgattaactaagtggaaaaatcgtggtaacgcgcattttagttgcgtgaccacgttttt 461  Q
    ||||||||| |||||||||| ||||||| ||||| ||| | ||||||||||||||||||| |||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacattttt 87047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 399
Target Start/End: Original strand, 86895 - 87002
Alignment:
Q  292 ttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggtctatgtgaccatannnnnnnagttgtgtgaccactagttttc 391  Q
    ||||||||||||||||||| || ||||||  |||| |||| |||||||||||||| || | |||||||| |        ||||||||||||||| |||||    
T  86895 ttaatgtgtacacccctttctaccattctagaaaacttcaattaatcaaatatatagtttgtgtgaccacattttttcggttgtgtgaccactatttttc 86994  T
Q  392 cagaattt 399  Q
    ||| ||||    
T  86995 cagcattt 87002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 49407 - 49484
Alignment:
Q  271 agcaataataggaagacacctttaatgtgtacacccctttttatcattctgaaaaatttcagttaatcaaatatatggt 349  Q
    |||||| ||||| ||||||| ||||| | |||||  ||| | ||||||||||||||||| |||||| ||||||||||||    
T  49407 agcaatgataggtagacacccttaatttctacacgtcttat-atcattctgaaaaatttaagttaaccaaatatatggt 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University