View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3766_low_2 (Length: 567)
Name: NF3766_low_2
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 5160188 - 5159666
Alignment:
| Q |
20 |
aatcccttttcctacaagatccttcataagcctctccacaacagctttccctagaccaagcccttgaaacgaaggatcaacaacaacatcccatattatc |
119 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160188 |
aatccctcttcctacaagatccctcataagcctctccacaacagctttccctagcccaagcccttgaaacgaaggatcaacaacaacatcccatattatc |
5160089 |
T |
|
| Q |
120 |
gcattgaaaacaccatcaccagtagctcttgcaaatgcaaccgcattattctgtgacttcctctcttgtatccataccaatgagtcagtgtgctcgagtg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160088 |
gcattgaaaacaccatcaccagtagctcttgcaaatgcaaccgcattattctgcgacttcctctcttgtatccataccaatgagtcagtgtgctcgagtg |
5159989 |
T |
|
| Q |
220 |
caacgcgtattttctccgggtcgcgccgcggaaaccctactgctacgaatattttgttaagtgcttctaggtttaacccctctgcggttcggcggagaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159988 |
caacgcgtattttctccgggtcgcgccgcggaaaccctactgctacaaatattttgttaagtgcttctaggtttaacccctctgcggttcggcggagaat |
5159889 |
T |
|
| Q |
320 |
gaaacctcgcttttctagggtttcgtcggatattgagagtgggtagtctaggcttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159888 |
gaaacctcgcttttctagggtttcgtcggatattgagagtgggtagtctaggcttgcttgacaagaaatggtgaggtttcgtgggtgagtttgtgatttg |
5159789 |
T |
|
| Q |
420 |
aagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159788 |
aagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctc |
5159689 |
T |
|
| Q |
520 |
tctctattcttcagaatttgtag |
542 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5159688 |
tctctattcttcagaatttgtag |
5159666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University