View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3766_low_4 (Length: 439)
Name: NF3766_low_4
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 33121711 - 33121287
Alignment:
| Q |
7 |
ctgagatgaagccaggttcatggactcaacaaggtgttcctattactctcctcgagaataagatgagtagagtttttgctgcacctcctaaagaaagaac |
106 |
Q |
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| T |
33121711 |
ctgaaatgaagccaggttcatggactcaacaaggtgttcctattactctcctcgagaataagatgagtagagtttttgctgcacctcctaaagaaagaac |
33121612 |
T |
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| Q |
107 |
aaaggctttttataacacaccaccttcaaaatatgaaatcattgatcaggttagaacgacgagtttcattttgatacaatattttttacacaatcaatca |
206 |
Q |
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| T |
33121611 |
aaaggctttttataacacaccaccttcaaaatatgaaatcattgatcaggttagaacgacgagtttcattttgatacaatattttttacacaatcaatca |
33121512 |
T |
|
| Q |
207 |
atcataagctgtcacattattgaaaatgatccttacacagacaatgcataccaattaaattctagaatgacttacattgtggacatgtgacgaacaaaac |
306 |
Q |
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| T |
33121511 |
atcataagctgtcacattattgaaaatgatccttacacagacaatgcataccaattaaattctagaatgacttacattgtggacatgtgacgaacaaaac |
33121412 |
T |
|
| Q |
307 |
atttggaatttttcatgtaccatatttagtgaagcc-----------nnnnnnnnnnctttctttcagggacgtgagattttctacagggtgataagaat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33121411 |
atttggaatttttcatgtaccatatttagtgaagcctttttatagaatggtttttttctttctttcagggacgtgagattttctacagggtgataagaat |
33121312 |
T |
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| Q |
396 |
gggatttgaggatatttatgtgtca |
420 |
Q |
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| T |
33121311 |
gggatttgaggatatttatgtgtca |
33121287 |
T |
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