View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3766_low_6 (Length: 397)
Name: NF3766_low_6
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 31292174 - 31292538
Alignment:
| Q |
18 |
ataggctgggtgagggtcattctctatcttaattaactcattaagtttcctattgaggatataacattggacatcggccatgttcgtcttccatagattg |
117 |
Q |
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| T |
31292174 |
ataggctgggtgagggtcattctctatcttaattaactcattaagtttccttttgaggatataacatcagacgtcggccaagttcgtcttccatagattg |
31292273 |
T |
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| Q |
118 |
ttaaggttgtgacagagtttccaaaggcttgtgagattttaagttgcacaaatccctctgaaaatcaattatttccatggatctcatcgtgaatactcag |
217 |
Q |
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| T |
31292274 |
ttaaggttgtgacagagttcccaaaggcttgtgagattttaagttgcacaaatccctctgaaaattaattatctccatggatctcgtcgtgaatacttag |
31292373 |
T |
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| Q |
218 |
gctcaacatgaatctgctaggttatgacactccaatcaccgagttcagcatgtggagttgctatgatggatctagctatcttggaagatttcacacc-tt |
316 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
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| T |
31292374 |
gctcaacatgaatttgctagattatgacactccaatcgtcgagttcaacatgtggagttgctatgatagatctagctattttggaagatttcacaccttt |
31292473 |
T |
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| Q |
317 |
ttccaactattattttggtaagccgagggaacgaagttacaagaacttagttcccataaacgttg |
381 |
Q |
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| T |
31292474 |
ttccaactattattttggtaggccaagggaacaaagttacaagaacttagtttccataaacgttg |
31292538 |
T |
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