View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3766_low_9 (Length: 279)
Name: NF3766_low_9
Description: NF3766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3766_low_9 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 276404 - 276136
Alignment:
| Q |
11 |
cagagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276404 |
cagagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
276305 |
T |
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| Q |
111 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276304 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
276205 |
T |
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| Q |
211 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
276204 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatcttaagaaaaggaatgaagat |
276136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 26397009 - 26396741
Alignment:
| Q |
11 |
cagagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
110 |
Q |
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| T |
26397009 |
cagagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
26396910 |
T |
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| Q |
111 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396909 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
26396810 |
T |
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| Q |
211 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagat |
279 |
Q |
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| T |
26396809 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatcttaagaaaaggaatgaagat |
26396741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 19217305 - 19217236
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagata |
103 |
Q |
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|||||||||||||| |||||||||||||| || || ||| |||||||||| |||| | |||||||||| |
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| T |
19217305 |
gacaaatatgtaggtaagaaaactacattaaaggagtttaatgaaaaatatatagtttccttgcaagata |
19217236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 29293 - 29026
Alignment:
| Q |
12 |
agagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaa |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29293 |
agagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaa |
29194 |
T |
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| Q |
112 |
gcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaag |
211 |
Q |
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| T |
29193 |
gcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaag |
29094 |
T |
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| Q |
212 |
tattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29093 |
tattcaaaaagttccaagttgaaattatgggattatctggatgtcatgtcaagaaaaggaatgaagat |
29026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 56109053 - 56109273
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaagcagaaatgcatgctgatttta |
133 |
Q |
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|||||||||||| | |||||||||||||| || |||||||| ||||||||| |||||||||| || ||||| ||||| || |||| ||| |||||||||| |
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| T |
56109053 |
gacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgatagagaagaggcggaaaagcaagctgatttta |
56109152 |
T |
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| Q |
134 |
atacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaagtattcaaaaagttccaagttga |
233 |
Q |
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| |||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| | ||||| || || |||||||| |
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| T |
56109153 |
agacatggcacaagcaacctgttcttaggactccatcaccttttgagaagcaaatgtcgatgatatatacacatgaaatcttcaagaaatttcaagttga |
56109252 |
T |
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| Q |
234 |
aattatgggattatctggatg |
254 |
Q |
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| || |||||||||||||||| |
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| T |
56109253 |
agttttgggattatctggatg |
56109273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 26014820 - 26015041
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaagcagaaatgcatgctgatttta |
133 |
Q |
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|||||||||||| | |||||||| ||||| || |||||||| ||||||||| |||||||||| || ||||| ||||| || |||| ||| |||||||||| |
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| T |
26014820 |
gacaaatatgtatgtaagaaaacaacattaaaggaatttgtcgaaaaatataaagttgctttacatgatagagaagaggcggaaaagcaagctgatttta |
26014919 |
T |
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| Q |
134 |
atacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaagtattcaaaaagttccaagttga |
233 |
Q |
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| |||||||| || |||| ||||||| ||||||||||||||||||||||||||||| | ||| ||||| ||| || | |||| || || |||||||| |
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| T |
26014920 |
agacatggcacaagcaacgtgttcttaggactccatcaccttttgagaagcaaatgtcgaggatatatacacat-aaatcgtcaagaaatttcaagttga |
26015018 |
T |
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| Q |
234 |
aattatgggattatctggatgtc |
256 |
Q |
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| || |||||||||||||||||| |
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| T |
26015019 |
agttttgggattatctggatgtc |
26015041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 6967486 - 6967547
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
95 |
Q |
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|||||||||||| | |||||||||||||| || |||||||| ||||||||| |||||||||| |
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| T |
6967486 |
gacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgcttt |
6967547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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