View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_11 (Length: 364)
Name: NF3767_high_11
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_11 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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Alignment Details
Target: scaffold0638 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 350
Target Start/End: Complemental strand, 5020 - 4681
Alignment:
| Q |
9 |
ataattcttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
5020 |
ataattcttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcacttatatcaaccgttgttccatcattggctgcttctttc |
4921 |
T |
|
| Q |
109 |
ataaacttgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgt |
208 |
Q |
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||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4920 |
ataaacttgatcaataggtcaagctc--gtttcctcatgcttctaaaactattgatttttgaatggctcaacaattctaacgtgcacatcttgtgcatgt |
4823 |
T |
|
| Q |
209 |
ttcgccaataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4822 |
ttcgccaataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagagaagatc |
4723 |
T |
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| Q |
309 |
atgagtcttgaggaagagttcagcagcttgaggtgaagaaac |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4722 |
atgagtcttgaggaagagttcagcagcttgaggtgaagaaac |
4681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 27412216 - 27411882
Alignment:
| Q |
16 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
115 |
Q |
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||||||||||| ||| | |||||||||||||| || |||| || |||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
27412216 |
ttcccaaaaactattatgcaagtcatatcagctgtaagtgcagcaaccttggcacttatatcaaccgttgttccatcattggctgcttctcttataaact |
27412117 |
T |
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| Q |
116 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
215 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27412116 |
tgatcaataggtcaagctcttgttccctcatacttctaaaactgttgatttttgtatggctcaacaattctaatgtgcacatcttgcgcatgtttcgcca |
27412017 |
T |
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| Q |
216 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
315 |
Q |
| |
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||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| | |||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
27412016 |
atacgaaccgtatacactgaagctcacatccttctgattgtaaaacatgagttgtgctgcctcaataggtggtctacttgcaaagacaatatcatgagtc |
27411917 |
T |
|
| Q |
316 |
ttgaggaagagttcagcagcttgaggtgaagaaac |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
27411916 |
ttgaggaagagttcagcagcttgaggtgaagaaac |
27411882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 8466 - 8800
Alignment:
| Q |
16 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
115 |
Q |
| |
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||||||||||| ||| | |||||||||||| | || |||| || |||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
8466 |
ttcccaaaaactattatgcaagtcatatcaactgtaagtgcagcaaccttggcacttatatcaaccgttgttccatcattggctgcttctcttataaact |
8565 |
T |
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| Q |
116 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
215 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8566 |
tgatcaataggtcaagctcttgttccctcataattctaaaactgttgatttttgaatggctcaacaattctaatgtgcacatcttgcgcatgtttcgcca |
8665 |
T |
|
| Q |
216 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
315 |
Q |
| |
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||| ||||||||||||||||| || ||||| ||||||||||||||||||| || | |||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
8666 |
atatgaaccgtatacactgaagctaacatccttctgattataaaacatgaattatactgcctcaataggtggtctacttgcaaagacaaaatcatgagtc |
8765 |
T |
|
| Q |
316 |
ttgaggaagagttcagcagcttgaggtgaagaaac |
350 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
8766 |
ttgagaaagagttcagcagcttgaggtgaagaaac |
8800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 38258426 - 38258091
Alignment:
| Q |
16 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
115 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| | | ||||| |
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| T |
38258426 |
ttccccaaaaccattctacaactcatatcagcagtgagtgtagaaaccttggtgcttaaatcaacctttgttctatcattggtcttttctcttaaaaact |
38258327 |
T |
|
| Q |
116 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
215 |
Q |
| |
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| || ||||||||||| |||||||| |||||| || |||| || ||||||| |||||||||||||||||| |||||||| || | |||||||||||| |
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| T |
38258326 |
ttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatgtttcgcca |
38258227 |
T |
|
| Q |
216 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatga-gttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagt |
314 |
Q |
| |
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||||||||| ||| ||| ||||||| | || ||| || |||| |||| |||||||| |||||||| || |||||||||||||||||||| |
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| T |
38258226 |
ataagaaccatattcaccaaaactcaagttcctccgatcccaaccgatgattttttgctgcctcaattggtggtctgcttgcaaagacaagatcatgagt |
38258127 |
T |
|
| Q |
315 |
cttgaggaagagttcagcagcttgaggtgaagaaac |
350 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||| |
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| T |
38258126 |
cttgaggaaaagttcagctgcttgaggtgaagaaac |
38258091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 38262176 - 38261848
Alignment:
| Q |
16 |
ttcccaaaaaccattctacaagtcatatcagcagtgagtgtagaaaccttggcagttatatcaaccattgttccatcattggctgcttctttcataaact |
115 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | |||||||||||| || ||| ||| ||||||| ||||||| ||||| ||| || | |||| |
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| T |
38262176 |
ttccctaaaaccattctacaactcatatcagccgcgagtgtagaaactttagcacttaaatcaacctttgttccgtcattagct------tttagaaaca |
38262083 |
T |
|
| Q |
116 |
tgatgaataggtcaagctcttgttctctcatgcttctaaaactgttgatttttgaatggctcaacaattctaacgtgcacatcttgcgcatgtttcgcca |
215 |
Q |
| |
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| || ||||||||||| |||||||| |||||| || |||| || ||||||| |||||||||||||||||| |||||||| || | ||| |||||||| |
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| T |
38262082 |
ttatcaataggtcaagttcttgttccctcatggttttaaatgaatttatttttgcatggctcaacaattctaaagtgcacatttttctcatatttcgcca |
38261983 |
T |
|
| Q |
216 |
ataagaaccgtatacactgaaactcacatctttctgattataaaacatgagttttcctgcctcagaaggtggtctactagcaaagacaagatcatgagtc |
315 |
Q |
| |
|
||||||||| ||| ||| ||||||| | |||| | || | || | |||| ||||| | |||||||||||| |||||||||||||||||||| |
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|
| T |
38261982 |
ataagaaccatattcaccaaaactcaagttcctctggtcccaagagattatttttgctgccaaatgaggtggtctacttgcaaagacaagatcatgagtt |
38261883 |
T |
|
| Q |
316 |
ttgaggaagagttcagcagcttgaggtgaagaaac |
350 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| |
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| T |
38261882 |
ttgaggaaaagttcagctgcttgaggtgatgaaac |
38261848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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