View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_12 (Length: 357)
Name: NF3767_high_12
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 3003460 - 3003132
Alignment:
| Q |
15 |
agaaggccacaagcttcaccttcattaatgaaacaaatggtagagtgacactccgttctagcaagcacaaagcgtccaaacttggcgtgtctggnnnnnn |
114 |
Q |
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| T |
3003460 |
agaaggccacaagcttcaccttcattaatgaaacaaatggaagagtgacactccgttctagcaagcacaaagcgtccaaacttggcgtatctggtttttt |
3003361 |
T |
|
| Q |
115 |
nccctgcactgctgtcgaacctgcactgatgtaccgctgc-cctgcaccagctttgaaataactgctcagcgcgccaaaaaatatgctgctattgttaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
3003360 |
tccctgcactgctgtcgaacctgcactgatgtaccgctgcacctgcaccagctttgaaataactactcagcgcgccaaaaaatatgctgctgttgttaac |
3003261 |
T |
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| Q |
214 |
aaacattctcctagatgcggatatcacgacttttccaaatactccaaataataaccgcaaagagacactatgtcggagataaaatatcgtaatgcagtaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3003260 |
aaacattctcctagatgcggatatcacgacttttccgaatactccaaataataaccgcaaagagacactatgtcggagataaaatatcataatgcagtaa |
3003161 |
T |
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| Q |
314 |
aaactcatctgctttacatttgttcttaa |
342 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3003160 |
aaactcatctgctttacatttgttcttaa |
3003132 |
T |
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