View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_15 (Length: 314)
Name: NF3767_high_15
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 43758210 - 43758386
Alignment:
| Q |
123 |
gaagagcttaattcaactgagaaaatcaaacatgggagctagtcaatctaccagttgagaagaaagcgataagtgtgaagtggatgtgtaaagtgaagca |
222 |
Q |
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| T |
43758210 |
gaagagcttaattcaattgagaaaatcaaacatgggagctagtcaatctaccagttgagaagaaagcgataagtgtgaagtggatgtgtaaagtgaagca |
43758309 |
T |
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| Q |
223 |
gaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcaggaatatatt |
299 |
Q |
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| T |
43758310 |
gaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcagggatatatt |
43758386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 43757606 - 43757680
Alignment:
| Q |
40 |
aatatctcctaaattgatccaattgaatgagtgtgagatcaatcgaagcttgcatatgaagatgaagacacaaaa |
114 |
Q |
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| T |
43757606 |
aataactcctaaattgatccaattgaatgagtgtgagatcaatcgaagcttgcatatgaagatgaagacacaaaa |
43757680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 43757461 - 43757511
Alignment:
| Q |
26 |
ctaagagtttctttaa----tatctcctaaattgatccaattgaatgagtg |
72 |
Q |
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| T |
43757461 |
ctaagagtttctttaagttttatctcctaaattgatccaattgagtgagtg |
43757511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 32656496 - 32656413
Alignment:
| Q |
207 |
tgtgtaaagtgaagcagaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcag |
290 |
Q |
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| T |
32656496 |
tgtgtaaagtaaagcagaatccaagtggaggagtgaccaaatacaagactagacttaaatctagaggattcttgcagagagcag |
32656413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 32656555 - 32656506
Alignment:
| Q |
123 |
gaagagcttaattcaactgagaaaatcaaacatgggagctagtcaatcta |
172 |
Q |
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| T |
32656555 |
gaagagcttaattcaattgagaaaatcatacatgggagctagttaatcta |
32656506 |
T |
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