View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_19 (Length: 285)
Name: NF3767_high_19
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 17650305 - 17650589
Alignment:
| Q |
1 |
cttctgtgtattaatgctggaaattgttggataggtccactttgcgatatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650305 |
cttctgtgtattaatgctggaaattgttggataggtccactttgcgagatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
17650404 |
T |
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| Q |
101 |
gcgtggatgtataaaacgccacacaagtgcaattaagccttacttgactgaagcaaacaagatagaaagactaaagttttgcttgtcaatgttggatagt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650405 |
gcgtggatgtataaaacgccacacaagtacaattaagccttacttgactgaagcaaacaagatagaaagactaaagttttgcttgtcaatgttggatagt |
17650504 |
T |
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| Q |
201 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtggttttatatgaccaaaaaat |
285 |
Q |
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| T |
17650505 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtggttttatatgaccaaaaaat |
17650589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 42540674 - 42540390
Alignment:
| Q |
1 |
cttctgtgtattaatgctggaaattgttggataggtccactttgcgatatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42540674 |
cttctgtgtattaatgctggaaattgttggataggtccactttgcgagatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
42540575 |
T |
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| Q |
101 |
gcgtggatgtataaaacgccacacaagtgcaattaagccttacttgactgaagcaaacaagatagaaagactaaagttttgcttgtcaatgttggatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42540574 |
gcgtggatgtataaaacgccacacaagtgcaattaagccttacttgactgaagcaaacaagatagaaaaactaaagttttgcttgtcaatgttggatagt |
42540475 |
T |
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| Q |
201 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtggttttatatgaccaaaaaat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42540474 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtgattttatatgaccaaaaaat |
42540390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1328880 - 1329164
Alignment:
| Q |
1 |
cttctgtgtattaatgctggaaattgttggataggtccactttgcgatatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
100 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328880 |
cttctgtgtattaatgttggaaattgttggataggtccactttgcgagatttagctgaagctttgaaaataaacaagtccagtttatcgagaatgcagaa |
1328979 |
T |
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| Q |
101 |
gcgtggatgtataaaacgccacacaagtgcaattaagccttacttgactgaagcaaacaagatagaaagactaaagttttgcttgtcaatgttggatagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1328980 |
gcgtggatgtataaaacgccacacaagtgcaattaagccttgcttgactgaagcaaacaagatagaaaaactaaagttttgcttgtcaatgttggatagt |
1329079 |
T |
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| Q |
201 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtggttttatatgaccaaaaaat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329080 |
agtacaatgccacatgatccaaccttcaaaacaatgcataacattgtacatatagacgaaaagtggttttatatgaccaaaaaat |
1329164 |
T |
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