View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_20 (Length: 283)
Name: NF3767_high_20
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 55017541 - 55017288
Alignment:
| Q |
11 |
cacagacacatggaatcttgttacataaacaaaaattaataatttgatactagtattatacatttaaaccagcaatattaatcaccaccaaaatgaaaaa |
110 |
Q |
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| T |
55017541 |
cacacacacatggaatcttgttacataaacaaaaattaataatttgatactagtattatacatttaaaccagcaatattaatcaccaccaaaaagaaaaa |
55017442 |
T |
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| Q |
111 |
taaacaatgaacaaacccctgaattaccagtcttatggagtactaaatactcttaatttagttaacaaattactagcattgtagtatgcaaaagaaaata |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
55017441 |
taaacaatgaacaaacccctgaattaccagtcttatggagtactaaatactcttaatttagttaacaaattactagcattgcaatatgcaaaagaaaata |
55017342 |
T |
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| Q |
211 |
ataccatgtaaatgataaagtatttgtaagtgtaacaacttaaattgatctagg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55017341 |
ataccatgtaaatgataaagtatttgtaagtgtaacaacttaaattgatctagg |
55017288 |
T |
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