View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_24 (Length: 261)
Name: NF3767_high_24
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 50877614 - 50877861
Alignment:
| Q |
1 |
aatgattgaaagggatcaaaatgaaagaatttaattaagtagttaggtgtgaaagcgattgtaattaaattagaagattccccatgttgcctataaatac |
100 |
Q |
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| T |
50877614 |
aatgattgaaagggatcaaaatgaaagaatttaattaagtagttaggtgtgaaagcgattttaattaaattagaagattccccatgttgcctataaatac |
50877713 |
T |
|
| Q |
101 |
acaagaatttttgaggnnnnnnnnnnnnn-ttcaattcaactaaaacacgcaaaaacataaaatgaagaagttttctattgttcttgtgtttgcaatcac |
199 |
Q |
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| T |
50877714 |
acaagaatttttgaggaaaaaaaaaaaaaattcaattcaactaaaacacgcaaaaacataaaatgaagaagttttctattgttcttgtgtttgcaatcac |
50877813 |
T |
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| Q |
200 |
gagtggctactggaagcaatctcctcctatgtgaggagggttgtttct |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50877814 |
gagtggctactggaagcaatctcctcctatgtgaggagggttgtttct |
50877861 |
T |
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