View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_25 (Length: 250)
Name: NF3767_high_25
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 42540160 - 42539923
Alignment:
| Q |
1 |
cacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaatt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42540160 |
cacttcagtcaatagagaaatttgtagaaagtttttgatcgaaaaagttattcctgccataaaacaaaagtggccaagagatgaaataggccaaccaatt |
42540061 |
T |
|
| Q |
101 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42540060 |
ttcattcaacaggataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
42539961 |
T |
|
| Q |
201 |
aacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42539960 |
aacctcccaattcccctgaactaaatgtcttagacctt |
42539923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 37934218 - 37934262
Alignment:
| Q |
194 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
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|||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
37934218 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagacctt |
37934262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17783336 - 17783099
Alignment:
| Q |
1 |
cacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaatt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17783336 |
cacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgtcataaaagaaaagtggccaagagataaaataggccaaccaatt |
17783237 |
T |
|
| Q |
101 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17783236 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagcttcctcacaagatgggttcgacattcgactgatgtgtc |
17783137 |
T |
|
| Q |
201 |
aacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
17783136 |
aacctcccaattcccctgaactaaatgtcttagacctt |
17783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1329394 - 1329631
Alignment:
| Q |
1 |
cacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1329394 |
cacttcagtcaatagagaaatttgtagaaagtttttgatcgaaaaagttattcctgccataaaacaaaagtggccaagagatgaaataggccaaccaatt |
1329493 |
T |
|
| Q |
101 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329494 |
ttcattcaacaggataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
1329593 |
T |
|
| Q |
201 |
aacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
1329594 |
aacctcccaattcccctgaactaaatgtcttagacctt |
1329631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 10328604 - 10328648
Alignment:
| Q |
194 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
10328604 |
atgtgtcaacctccaaattctcctgatctaaatgtcttagacctt |
10328648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 17650819 - 17651056
Alignment:
| Q |
1 |
cacttcagtcaatagagaagtttgtagaaagtttttgatcgaaaaagttattcctgccataaaagaaaagtggccaagagatgaaataggccaaccaatt |
100 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17650819 |
cacttcagtgaatagagaagactgtagaaagtttttgatcgaaaaagttattccaaccataaaagaaaagtgtccaagagatgaaataggccaaccaatt |
17650918 |
T |
|
| Q |
101 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacgacattgaatttcgtcaagctgcctcacaagatgggttcgacattcgactgatgtgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
17650919 |
ttcattcaacaagataacgcaagatgtcacgtcaatgagaacaacattgaatttcgtcaagctgcctcacaagatggtttcgacattcgattgatgtgtc |
17651018 |
T |
|
| Q |
201 |
aacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17651019 |
aacctcccaattcccttgaactaaatgtcttagacctt |
17651056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 384661 - 384705
Alignment:
| Q |
194 |
atgtgtcaacctcccaattcccctgaactaaatgtcttagacctt |
238 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
384661 |
atgtgtcaacctccaaattcccctgatctaaatgtcttagacctt |
384705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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