View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_high_3 (Length: 547)
Name: NF3767_high_3
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 14376662 - 14376145
Alignment:
| Q |
14 |
atatggcggactcttaagatcacgtactcgaaggatccccattaatgcatcattcagaattttctgcatgagaaaaagtcaagtttatttgtttgatatg |
113 |
Q |
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| T |
14376662 |
atatggcggactcttaagatctcgtactcgaaggatccccattaatgcatcattcagaattttctgcatgagaaaaagtcaagtttatttgtttgatatg |
14376563 |
T |
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| Q |
114 |
aagaatattatactcttcgcaataattggatttatggaccagcaaactcagaaaatgcatgacactctttccatctacacgccaatcaccattagtagct |
213 |
Q |
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| T |
14376562 |
aagaatattatactcttcgcaataattggatttatggaccagcaaactcagaaaatgcatgacactctttccatctacacgccaatcaccattagtagct |
14376463 |
T |
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| Q |
214 |
tgaatattggtatatattttaaataactatttttctatggagcccatacacttgatttgacatggtatataatataacacggatatggggatatgggaaa |
313 |
Q |
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| T |
14376462 |
tgaatattggtataaattttaaataactatttttctatggagcccatacacttgatttgacatggtatataatataacacggatatggggatatgggaaa |
14376363 |
T |
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| Q |
314 |
ttcttaaaacccaaagatacgatgcgatctagatatattaacactgaattataaattaatnnnnnnnncatatttcacataaatgcataatgttagtaga |
413 |
Q |
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| T |
14376362 |
ttcttaaaaccaaaagatacgatgtgatctagatatattaacactgaattataaattaataaaaaaagcatatttcacataaatgcataatgttagtaga |
14376263 |
T |
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| Q |
414 |
aggacgttgatattttttattactgactacatatgcaaatgaggttgcaatttacaacaagatatttgtaatcaatctgtttgtatgcactccaattgtg |
513 |
Q |
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| T |
14376262 |
aggacgttgatattttttattactgactacatatgcaaatgaggttgcaatttacgacaagatatttgtaatcaatctgtttgtatgcactccaattgtg |
14376163 |
T |
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| Q |
514 |
ctcacaacattatataag |
531 |
Q |
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| T |
14376162 |
ctcacaacattatataag |
14376145 |
T |
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