View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_13 (Length: 340)
Name: NF3767_low_13
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 44221979 - 44221777
Alignment:
| Q |
106 |
tgaattgtccaccaaagaatattgaagagcataatatatagtactatatacataccaagttccatgtcaaatccacggttttcaagctcacgatattctt |
205 |
Q |
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| T |
44221979 |
tgaattgtccaccaaagaatattgaagagcata--------------atacataccaagttccatgtcaaatccacggttttcaagctcacgatattctt |
44221894 |
T |
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| Q |
206 |
gacacaatgcacatgattcacaacagcaatgaactaagcaatcacaacaaggagtgtctttgagcatgtattgttgtctcattttgttacggtagatgca |
305 |
Q |
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| T |
44221893 |
gacacaatgcacatgattcacaacagcaatgaactaagcaatcacaacaaggagtgtctttgagcatgtattgttgtctcattttgttacggtagatgca |
44221794 |
T |
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| Q |
306 |
tgagtataaacaaccac |
322 |
Q |
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| T |
44221793 |
tgagtataaacaaccac |
44221777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 44211831 - 44211733
Alignment:
| Q |
150 |
tatatacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc |
248 |
Q |
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| T |
44211831 |
tatatacataccaatgaccatgttaaatccacggttctcaagttcacgatattcttgacacaaggcgcaggcctcacagcagcaatgaatcaagcaatc |
44211733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 44222074 - 44222039
Alignment:
| Q |
11 |
aatactactataattcaaagtgatttaatttctatg |
46 |
Q |
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| T |
44222074 |
aatactactataattcaaagtgatttaatttctatg |
44222039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 6496201 - 6496106
Alignment:
| Q |
153 |
atacataccaagttccatgtcaaatccacggttttcaagctcacgatattcttgacacaatgcacatgattcacaacagcaatgaactaagcaatc |
248 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||| || || |||||||||| |||||||| |
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| T |
6496201 |
atacataccaatgaccatgttaaatccacggttttcaagctcacgatattcttgacacaaggcgcatgcctcgcagcagcaatgaatcaagcaatc |
6496106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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