View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_14 (Length: 326)
Name: NF3767_low_14
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 44967054 - 44966754
Alignment:
| Q |
11 |
cataggctaacgattatttattatttattttcactctatgttggatgcgtggtaatataagatgaaataagattataaataataatattatagagttttg |
110 |
Q |
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| T |
44967054 |
cataggctaacgattatttattatttattttcactctatgttggatgcgtggtaatataagatgaaataagaatataaataataatattatagagttttt |
44966955 |
T |
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| Q |
111 |
tttgttagcttaacacttatagatcaacctaatagtgaatacttt-gtatcttttgtcaacnnnnnnnnnnnnnngagtgaatatttcatatctataact |
209 |
Q |
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| T |
44966954 |
tttgttagcttaacac---tagatcaacctaatagtgaatactttagtatcttttgtcaa-------aaaaaaaagagtgaatatttcatatctataact |
44966865 |
T |
|
| Q |
210 |
tgattattagaaggaaaaacc--------tnnnnnnnnggtgaatcacatgttattgtaac-aatcattttattaggtctcgttaattcaggcgaagatg |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
44966864 |
tgattattagaaggaaaaaccctaaaaaaaaaaaaaaaggtgaatcacatgttattgtaacaaattatttaattaggtctcgttaattcaggcgaagatg |
44966765 |
T |
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| Q |
301 |
agtgcatactg |
311 |
Q |
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| T |
44966764 |
agtgcatactg |
44966754 |
T |
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