View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3767_low_16 (Length: 312)
Name: NF3767_low_16
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 32833833 - 32833532
Alignment:
| Q |
1 |
gtattatgtgtgtttgtagctttgtgctagttttatttatattggtttgattggtgatcaatttgattatactgactgaatttgtgaattttaattttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32833833 |
gtattatgtgtgtttgtagctttgtgctagttttatttatattggtttgattggtgatcaatttgattatactgactgaatttgtgaattttatttttta |
32833734 |
T |
|
| Q |
101 |
ggagattaaagctgtggaacttgttaaaccaactggttggctttatctctcattatctggacttgatcctcggtaagcatttttcgattatgtttttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32833733 |
ggagattaaagctgtggaacttgtgaaaccaactggttggctttatctctcattatctggacttgatcctcggtaagcatttttcgattatgttttcggt |
32833634 |
T |
|
| Q |
201 |
ttggtactcaatgtcaaatgttgtttgttgtctccttagtccttactatgtcaaatgctagcaattttccgcacattgaactaacctgcaagtcattctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833633 |
ttggtactcaatgtcaaatgttgtttgttatctccttaatccttactatgtcaaatgctagcaattttccgcacattgaactaacctgcaagtcattctg |
32833534 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
32833533 |
tg |
32833532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University