View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3767_low_17 (Length: 302)
Name: NF3767_low_17
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 30959063 - 30959348
Alignment:
| Q |
1 |
tattgatttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30959063 |
tattgatttaatacttgttaaatgttgcaaaataattgaaattcatcccctgaattgttgtgaaatctctttagtttgtgaatttcgcggaaatcatgtc |
30959162 |
T |
|
| Q |
101 |
aaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagtagcgcttggt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30959163 |
aaacaacatttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctcagtataagtataaggccgcagcagcgcttggt |
30959262 |
T |
|
| Q |
201 |
ctactagggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaatnnnnnnngagtctcaagttcat |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30959263 |
ctactagggtaagattatgattcattaccttcagtgttattctctattatttttcatattgaataaaaaaagagtctcaagttcat |
30959348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 11688939 - 11688829
Alignment:
| Q |
66 |
tctctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatccctt |
165 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| || | ||| |||||||||||| ||||||||||| || | |||||| ||| |||| |||| |
|
|
| T |
11688939 |
tctctttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattcctt |
11688840 |
T |
|
| Q |
166 |
ctcagtataag |
176 |
Q |
| |
|
||||||||||| |
|
|
| T |
11688839 |
ctcagtataag |
11688829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 7474336 - 7474443
Alignment:
| Q |
69 |
ctttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctctttcacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctc |
168 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| || |||||| ||| ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |
|
|
| T |
7474336 |
ctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctc |
7474435 |
T |
|
| Q |
169 |
agtataag |
176 |
Q |
| |
|
|||||||| |
|
|
| T |
7474436 |
agtataag |
7474443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University