View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_18 (Length: 300)
Name: NF3767_low_18
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 10120743 - 10120472
Alignment:
| Q |
11 |
cacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatcctttaagcattgaagctttaaggaag |
110 |
Q |
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| T |
10120743 |
cacagaaactactcccggcatttctggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatactttaagcattgaagctttaaggaag |
10120644 |
T |
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| Q |
111 |
aggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcc |
210 |
Q |
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| T |
10120643 |
aggaaaatgtcactgacttgaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgtaaatatgtgaagcc |
10120544 |
T |
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| Q |
211 |
tgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattc |
282 |
Q |
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| T |
10120543 |
tgtgcttgttcaacactgttaaaaaataaggaaaaatcacatacctgaaattacatagaaaaagggatattc |
10120472 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 30630322 - 30630415
Alignment:
| Q |
130 |
gaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcctgtgcttgttcaa |
223 |
Q |
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| T |
30630322 |
gaaattttggaagcttgttcatcagtgagcttagctgcaaagcctctgaatccatgtctatagctataaatatgagaagcttgtgcttcttcaa |
30630415 |
T |
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