View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3767_low_22 (Length: 273)

Name: NF3767_low_22
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3767_low_22
NF3767_low_22
[»] chr1 (16 HSPs)
chr1 (1-255)||(11890611-11890865)
chr1 (1-255)||(11881245-11881499)
chr1 (12-255)||(11903745-11903988)
chr1 (9-208)||(52819808-52820007)
chr1 (1-45)||(11890953-11890997)
chr1 (3-45)||(11881719-11881761)
chr1 (3-45)||(11891085-11891127)
chr1 (3-45)||(11881587-11881629)
chr1 (3-45)||(11881851-11881893)
chr1 (3-45)||(11904048-11904090)
chr1 (3-45)||(11904180-11904222)
chr1 (3-45)||(11904312-11904354)
chr1 (3-45)||(11904444-11904486)
chr1 (3-45)||(11904576-11904618)
chr1 (3-45)||(11904708-11904750)
chr1 (2-39)||(11882673-11882710)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 11890865 - 11890611
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11890865 ctggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaagcataagcaaatgg 11890766  T
Q  101 cttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11890765 cttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 11890666  T
Q  201 ggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagt 255  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11890665 ggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagt 11890611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 11881499 - 11881245
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11881499 ctggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatgg 11881400  T
Q  101 cttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggt 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11881399 cttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggt 11881300  T
Q  201 ggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagt 255  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  11881299 ggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagt 11881245  T

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Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 11903988 - 11903745
Alignment:
Q  12 ggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctttga 111  Q
    |||||||||| |  || |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11903988 ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga 11903889  T
Q  112 gcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 211  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903888 gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 11903789  T
Q  212 ggcagccttacacactgttgaaccatatttgacatagtcaaagt 255  Q
    || |||||| |||||||| |||||||||||||||||||||||||    
T  11903788 ggtagccttgcacactgtcgaaccatatttgacatagtcaaagt 11903745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 52819808 - 52820007
Alignment:
Q  9 ggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctt 108  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||| || || ||||||||||   |||| ||||| |||||||| || ||||||||||| |    
T  52819808 ggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagcct 52819907  T
Q  109 tgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcata 208  Q
    ||||||| || || ||||||||||| ||||| |    ||| |  ||||| |  || ||||| ||||||||||||||||| ||  | ||||||||||||||    
T  52819908 tgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcata 52820007  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11890997 - 11890953
Alignment:
Q  1 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11890997 ctggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881761 - 11881719
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11881761 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11891127 - 11891085
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11891127 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881629 - 11881587
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11881629 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11881893 - 11881851
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11881893 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904090 - 11904048
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11904090 ggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904222 - 11904180
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904222 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904354 - 11904312
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904354 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904486 - 11904444
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904486 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904618 - 11904576
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  11904618 ggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 11904750 - 11904708
Alignment:
Q  3 ggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 45  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  11904750 ggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
Q  2 tggtgcgggaggtggaggtgatttgtagtagtaaggag 39  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  11882710 tggtgagggaggtggaggtgatttgtaatagtaaggag 11882673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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