View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_24 (Length: 271)
Name: NF3767_low_24
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 11658497 - 11658747
Alignment:
| Q |
1 |
tatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggggatgacttgtttatcaagtaatctc------ |
94 |
Q |
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| T |
11658497 |
tatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggagatgacttgtttatcaagtaatctctcttct |
11658596 |
T |
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| Q |
95 |
tcctcttcttccattctaaacaacactttcaaattg--nnnnnnnnnnatctattatagaagg-aaatgtttctttaacatcttaaaggtgtatacacct |
191 |
Q |
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| T |
11658597 |
tcttcttcttccattctgaacaacactttcaaattgatttttttttttatctattatataaggaaaatgtttctttaacatcttaaaggtgtatacacct |
11658696 |
T |
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| Q |
192 |
tgagagatagagataagagaaattggtgtgaaatgttaatgatatgattggaa |
244 |
Q |
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| T |
11658697 |
tgagag--agagataagagagattggtgtgaaatgttgatgatatgattggaa |
11658747 |
T |
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Back To:
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 14932063 - 14932146
Alignment:
| Q |
8 |
gcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggggatgacttgtttatcaagtaat |
91 |
Q |
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| T |
14932063 |
gcctttctaattgtcataacagttgtacatgcttatgtggcaagttagttcgagttatgggagataacttgttcctcaagtaat |
14932146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 15584048 - 15584154
Alignment:
| Q |
5 |
atagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggggatgacttgtttatcaagtaatctctcctcttctt |
104 |
Q |
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| T |
15584048 |
atagcctttctaactgtcataatagaagtacaagcttatgtgacaagtaagttagagctatggtagatgacttgttcctcaagtaatctctcttcttttt |
15584147 |
T |
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| Q |
105 |
ccattct |
111 |
Q |
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|||||| |
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| T |
15584148 |
tcattct |
15584154 |
T |
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